Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq101 87.8 2e-12 seq20 86.0 5e-12 >seq101 Length=212447 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082 || ||||| ||||||| |||| || ||||| || ||||| ||||| | ||| Sbjct 117975 ACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAGTCC 117916 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 || ||| ||||| ||||| ||||| ||||| || ||||| | || || ||||||||| Sbjct 117915 AAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAGCGACTCATCTTCGCCGGCAAA 117856 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 || | ||||||| ||| || | || ||||| || || || || || || | || Sbjct 117855 CAGCTCGAAGATGGTCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCTACTTTGCAC 117796 Query 25203 TTAGTGCTAAGGCTAAGAGGAGG 25225 || || | ||||| |||| || Sbjct 117795 TTGGTCTTGAGGCTGCGAGGTGG 117773 >seq20 Length=67849 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| ||||||| ||||| || Sbjct 54075 ATGCAGATCTTCGTCAAGACACTCACTGGAAAGACTATCACTCTCGAAGTCGAGTCTTCG 54134 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| || | |||| || ||||| || || ||||||||||| Sbjct 54135 GACACCATTGACAACGTCA---AATCGAAAATCCAG-GACAAGGAGGGCATTCCACCTGA 54190 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||| || ||||| || || ||||| | || || | ||| || Sbjct 54191 CCAGCAGCGATTGATTTTCGCTGGCAAGCAGTTGGAAGACGGACGAACGCTTTCCGACTA 54250 Query 25175 CAATATTCAAAAAGAATCCAC 25195 ||| || || || || || || Sbjct 54251 CAACATCCAGAAGGAGTCGAC 54271 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||||||| || | ||||| | || || || || || Sbjct 53619 ATGCAAATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAGGTCGAATCTTCG 53678 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| | || | ||| |||||||| || || || ||||| || Sbjct 53679 GACACTATCGACAACGTCAAGTCTAAGATTCA-GGACAAAGAGGGTATCCCCCCTGATCA 53737 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || ||||| || ||| | ||||||| || || | ||| ||||| Sbjct 53738 GCAACGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACACTTTCCGACTACAA 53797 Query 25178 TATTCAAAAAGAATCCAC 25195 || || || || || || Sbjct 53798 CATCCAGAAGGAGTCTAC 53815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 25015 AGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCAC 25074 ||||| ||||||| || | ||||| | ||||| |||||||| || || || || || Sbjct 54614 AGACTCTGACCGGAAAGACTATCACGTTGGAAGTCGAGTCGTCGGATACGATTGA--CAA 54671 Query 25075 TG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTT 25131 || ||| | || | ||| ||||||||||| ||||| || ||||| ||||| | || | Sbjct 54672 TGTCAAGTCGAAGATTCAG-GACAAAGAAGGCATTCCCCCCGACCAGCAGCGATTGATCT 54730 Query 25132 TTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATA 25179 ||||||| || || || ||||| | | | ||| || || |||| || Sbjct 54731 TTGCCGGAAAGCAGTTGGAAGACGGTAGGACTTTGTCTGACTACAGTA 54778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323595491710