Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq20 127 2e-24 seq334 96.9 3e-15 seq101 89.7 4e-13 >seq20 Length=67849 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || ||| |||| |||||||| ||| | | Sbjct 54303 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACGATCACCCTTGAAGTCGAATCTTCG 54362 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| || ||||| ||||||||||| || || || || || Sbjct 54363 GATACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 54422 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || ||||| || || ||||| ||||| || || | || ||||||||| Sbjct 54423 CAACGGTTGATCTTTGCGGGAAAGCAGTTGGAGGACGGTCGAACTTTGTCGGATTACAAC 54482 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | ||||| || |||||| |||| || ||| Sbjct 54483 ATTCAGAAGGAGTCTACACTCCATTTGGTCTTGCGACTGCGAGGTGGT 54530 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || ||||||| ||||| || | | Sbjct 54075 ATGCAGATCTTCGTCAAGACACTCACTGGAAAGACTATCACTCTCGAAGTCGAGTCTTCG 54134 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | ||||| ||||| || ||||||||||| |||||||| || || Sbjct 54135 GACACCATTGACAACGTCAAATCGAAAATCCAGGACAAGGAGGGCATTCCACCTGACCAG 54194 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||||| || || || || | ||||| |||||| Sbjct 54195 CAGCGATTGATTTTCGCTGGCAAGCAGTTGGAAGACGGACGAACGCTTTCCGACTACAAC 54254 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || |||||||||||||| || ||| Sbjct 54255 ATCCAGAAGGAGTCGACTTTGCACTTGGTTTTGCGATTGCGAGGCGGT 54302 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || ||| ||||||| ||||| || || |||| || | ||| || |||| Sbjct 53415 ACCGGAAAGACGATCACTCTCGAAGTCGAGTCCTCCGACACAATCGACAATGTCAAGTCC 53474 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| |||||||| || ||||| || ||||| ||||| | || || ||||| || Sbjct 53475 AAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAGCAACGATTGATCTTCGCCGGAAAG 53534 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || ||| || || |||| |||||||||||||| || |||||||| | || Sbjct 53535 CAACTTGAAGATGGTCGAACTCTCTCGGATTACAACATTCAGAAGGAATCCACTCTCCAC 53594 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || || | ||||| || ||| Sbjct 53595 CTCGTCCTGAGGTTGCGGGGTGGT 53618 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || ||| | || | ||||| || | | | Sbjct 53847 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACGATTACCTTGGAAGTCGAGTCGAGC 53906 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || || || |||||||| || ||||| || || || Sbjct 53907 GATACCATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 53966 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| |||||| | || ||| || || | ||||| |||||| Sbjct 53967 CAGCGTTTGATTTTCGCCGGAAAACAGCTTGAAGATGGTCGAACTCTGTCCGACTACAAC 54026 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || | ||||| || | || | || |||||| Sbjct 54027 ATTCAGAAGGAATCGACTTTGCATTTGGTCCTTCGTCTCCGAGGAGGT 54074 >seq334 Length=295082 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 |||||||||||||| ||||| || || || || || || | || || |||||||| ||| Sbjct 55785 ATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 55726 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 | || ||| ||| ||| | ||||| |||||||| || || || || || | || || Sbjct 55725 CTCGAAGATGGCCGAACCCTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTG 55666 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||| || ||| Sbjct 55665 GTCTTGCGATTGCGTGGTGGT 55645 >seq101 Length=212447 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||| || |||| || || || || || | || ||| | ||| | |||| Sbjct 117975 ACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAGTCC 117916 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| || ||||| || ||||| || || || || || ||||||||| Sbjct 117915 AAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAGCGACTCATCTTCGCCGGCAAA 117856 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || ||| || ||| | || || |||||||| || || || || || | || Sbjct 117855 CAGCTCGAAGATGGTCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCTACTTTGCAC 117796 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||| | |||| || ||| Sbjct 117795 TTGGTCTTGAGGCTGCGAGGTGGT 117772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723733727210