Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq20 167 4e-36 seq101 152 9e-32 seq334 113 8e-20 seq279 86.0 1e-11 >seq20 Length=67849 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| | || ||||| || |||||||| || ||||| Sbjct 53845 CCGCCTCGGAGTCGGAGAACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 53786 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| | ||||| |||||||| || | || ||| || || || || Sbjct 53785 AGTGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGG 53726 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| |||||||| | ||||||| ||||| ||||| | ||||| || Sbjct 53725 ATACCCTCTTTGTCCTGAATCTTAGACTTGACGTTGTCGATAGTGTCCGAAGATTCGACC 53666 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || ||||| || | |||||||||||| || ||||| Sbjct 53665 TCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATTTGCAT 53619 Score = 167 bits (184), Expect = 4e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| | || ||||| || |||||||| || ||||| || || | || Sbjct 54289 CGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGTCCG 54230 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| |||||||| || ||||| || | || || ||||| ||||||||||| |||||| Sbjct 54229 TCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGAATGCCCTCCTTG 54170 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || || || || | |||||| || |||||||| | || || ||||| | ||||| Sbjct 54169 TCCTGGATTTTCGATTTGACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGAGTGATA 54110 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| ||||| ||||||||||| |||||||| Sbjct 54109 GTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCAT 54075 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| ||||| || || || ||||| || || ||||| ||||| || Sbjct 54529 CCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGAC 54470 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || |||||||| || || || || | | ||| ||||| || || Sbjct 54469 AAAGTTCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGGG 54410 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| || || || || | ||||| ||| Sbjct 54409 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGACT 54350 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || ||||| || | |||||||||||| |||||||| Sbjct 54349 TCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | ||||| || | || || || || || ||||| || ||||| Sbjct 54073 CCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGAC 54014 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || |||||||| || | | || ||||| || ||| Sbjct 54013 AGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGA 53954 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||||||||| || ||||| ||| ||| |||||||| || ||| || || || Sbjct 53953 ATTCCTTCCTTGTCCTGGATCTTGCTCTTAACGTTGTCGATGGTATC-GCTCGACTCGAC 53895 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||| || || ||||| || || ||||||||||| |||||||| Sbjct 53894 TTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 143 bits (158), Expect = 5e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||||| || || || ||||| ||||| ||||| || | |||||||| | || Sbjct 53594 GTGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAGAGAGTTCGACCATCTTCAAGTTG 53535 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| |||||||| || | || ||| || || || ||||| ||||||||||| |||||||| Sbjct 53534 CTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATCTT 53475 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | |||||| ||||| ||||| | || || ||||| | ||||| || ||||| || Sbjct 53474 GGACTTGACATTGTCGATTGTGTCGGAGGACTCGACTTCGAGAGTGATCGTCTTTCCGGT 53415 Query 68438 GAGGGTCTT 68446 ||||||||| Sbjct 53414 GAGGGTCTT 53406 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 68298 GTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATG 68357 ||||| || ||||| |||||||| ||||| || || | || || |||||||| |||||| Sbjct 54761 GTCCTACCGTCTTCCAACTGCTTTCCGGCAAAGATCAATCGCTGCTGGTCGGGGGGAATG 54702 Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| ||||| |||||||| | |||||| || || || || | || || |||||| Sbjct 54701 CCTTCTTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTATCCGACGACTCGACTTCC 54642 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCT 68445 || ||||| || ||||| || || |||| Sbjct 54641 AACGTGATAGTCTTTCCGGTCAGAGTCT 54614 >seq101 Length=212447 Score = 152 bits (168), Expect = 9e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || | ||| |||||||| | || ||||| || |||||||| || || || Sbjct 117773 CCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAA 117832 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || |||||||| ||||||| || || || || ||| Sbjct 117833 AGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGA 117892 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 117893 ATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 117952 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | ||||||||| || ||||||||| Sbjct 117953 TCGAGGGTGATGGTCTTACCCGTGAGG 117979 >seq334 Length=295082 Score = 113 bits (124), Expect = 8e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| | || ||||| || |||||||| || ||||| || || | ||| Sbjct 55658 CGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCA 55717 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||| |||||||| || | || || ||||| || || || ||||||||| Sbjct 55718 TCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTG 55777 Query 68367 TCTTGAATCT 68376 |||||||||| Sbjct 55778 TCTTGAATCT 55787 >seq279 Length=165861 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||| ||||| | |||||||||||||| ||||| || || ||||||||| Sbjct 162957 TATCGCCACAACATGTAGTCCAAGGGGGTCATGTCCAAGTGGTGATCGATGTGGTGGAAA 163016 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACAC 225084 || |||||||| ||||| | ||| || |||||| |||||||| || Sbjct 163017 GCGTGCTGGGCAACGTAACCGATGACCAAGTTGGGGTGCTTCCAGAC 163063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921612792086480