Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq20 152 1e-31 >seq20 Length=67849 Score = 152 bits (168), Expect = 1e-31 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | ||| | || ||| || || || || ||||||| Sbjct 54073 CCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGAC 54014 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | |||||||| ||||| |||| |||||| || | || Sbjct 54013 AGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGA 53954 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| || |||||||| || ||| || ||||| || || | ||||||||| || || Sbjct 53953 ATTCCTTCCTTGTCCTGGATCTT-GCTCTTAACGTTGTCGATGGTATCGCTCGACTCGAC 53895 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| | || |||||||| |||||||||||||||||||| |||||||| Sbjct 53894 TTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||||| ||||||||||| || || || || ||||| Sbjct 54265 TCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAA 54206 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||| || | ||| || || || || ||||||||||||| ||| ||||| Sbjct 54205 ATCAATCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGGATTTTCGATTTGACGTTG 54146 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || |||||||| ||||| ||||| || || || ||||||||| Sbjct 54145 TCAATGGTGTCCGAAGACTCGACTTCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACG 54086 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 54085 AAGATCTGCAT 54075 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || || || || ||||| | ||| ||||| |||||| Sbjct 53809 TCCTTCTGGATGTTGTAGTCGGAAAGTGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAG 53750 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || || ||| | ||||| || ||||| ||||| || || | || ||||| Sbjct 53749 ATCAATCGTTGCTGATCAGGGGGGATACCCTCTTTGTCCTGAATCTTAGACTTGACGTTG 53690 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || ||||| || || | ||||| ||||| ||||||| ||||||||| Sbjct 53689 TCGATAGTGTCCGAAGATTCGACCTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACG 53630 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 53629 AAGATTTGCAT 53619 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | || || ||||| || | ||| ||| || || || || || || | | Sbjct 53617 CCACCCCGCAACCTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAG 53558 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | ||| ||||| |||||||||| || || ||| | || Sbjct 53557 AGAGTTCGACCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGA 53498 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || ||||| || || | || || || || || | ||| || || ||| Sbjct 53497 ATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATTGTGTCGGAGGACTCGACT 53438 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| ||||||||||| ||||| || ||||| Sbjct 53437 TCGAGAGTGATCGTCTTTCCGGTGAGGGTCTT 53406 Score = 107 bits (118), Expect = 5e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 288310 GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATT 288369 || || ||||| || || || ||||| || ||||||| || || || | ||||| Sbjct 54466 GTTCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGGGATG 54407 Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || || ||||| || || | || ||||| || |||| ||| ||||| ||||| Sbjct 54406 CCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGACTTCA 54347 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||| ||||||| ||||||||||| |||||||| Sbjct 54346 AGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/145 (74%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 |||||||| || || ||||| || ||||||| ||||| || || ||| || ||| Sbjct 54755 CCGTCTTCCAACTGCTTTCCGGCAAAGATCAATCGCTGCTGG---TCGGGGGGAATGCCT 54699 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 ||||| ||||| || |||| || || || || || | ||| ||| || ||||| | | Sbjct 54698 TCTTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTATCCGACGACTCGACTTCCAAC 54639 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCT 288457 ||||| ||||| ||||||||||||| Sbjct 54638 GTGATAGTCTTTCCGGTCAGAGTCT 54614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179641794655452