Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq20 127 2e-24 >seq20 Length=67849 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| || ||||| ||||| ||||| || |||||| || || ||||| || | Sbjct 54302 ACCGCCTCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGA 54243 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || | |||||| |||||||| || | |||||||||||| | ||| Sbjct 54242 AAGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGG 54183 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || |||||||||| |||||| ||||| ||| | | | ||||| || || | Sbjct 54182 AATGCCCTCCTTGTCCTGGATTTTCGATTTGA-CGTTGTCAATGGTGTCCGAAGACTCGA 54124 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| ||||| || || || || || ||||| || ||||| ||||| Sbjct 54123 CTTCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCAT 54075 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | ||| | ||||||||||| || ||||| ||||| ||||| || | Sbjct 54074 ACCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGA 54015 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| || | || || ||||| || || ||||| || | ||||||||||| | || Sbjct 54014 CAGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGG 53955 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||||||||| || | || | | | ||| | | | || |||||||| || | Sbjct 53954 AATTCCTTCCTTGTCC-TGGATCTTGCTCTTAACGTTGTCGATGGTATCGCTCGACTCGA 53896 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || || || || || || || ||||| || ||||| ||||| Sbjct 53895 CTTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543207137006560