Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq20 105 7e-18 >seq20 Length=67849 Score = 105 bits (116), Expect = 7e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || ||||| | | || ||||| ||||||||||||||| | Sbjct 54073 CCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGAC 54014 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || ||||| |||| | || | |||||| ||||| ||||| Sbjct 54013 AGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGA 53954 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| || | || | |||| ||| || | ||| ||| ||||||| | Sbjct 53953 ATTCCTTCCTTGTC-CTGGATCTTGCTCTTAACGTTG-TCGATGGTATCGCTCGACTCGA 53896 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||| || || |||||||| || || || |||||||| Sbjct 53895 CTTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||||||| |||||||| || || | | |||||||| || |||||||||||| Sbjct 54301 CCGCCTCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 54242 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || | || || || | | || | ||||| ||||| || || Sbjct 54241 AGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGA 54182 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| ||| | | || | |||||| | ||||| || Sbjct 54181 ATGCCCTCCTTGTCCTGGATTTTCGATTTGACGTTGTCAATGGTGTCCGAAGACTCGACT 54122 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||| || || || || || |||||||| Sbjct 54121 TCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCAT 54075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496257226464480