Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq20 134 1e-26 seq101 109 5e-19 seq334 93.3 4e-14 >seq20 Length=67849 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || |||||||| ||||| || | || ||||| || || || ||||| ||| Sbjct 54301 CCGCCTCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 54242 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || | ||| || |||||| | |||||||||||||| || || || Sbjct 54241 AGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGA 54182 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||||||| |||| ||||| | | |||||||| | |||||| Sbjct 54181 ATGCCCTCCTTGTCCTGGATTTTCGATTTGACGTTGT-CAATGGTGTCCGAAGACTCGAC 54123 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | || || || || || || || || || |||||||| Sbjct 54122 TTCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCAT 54075 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || || || || ||||| ||||| ||| || || ||| ||| || Sbjct 54055 ACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGACCATCTTCA 53996 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||||||||| ||| | ||||| |||||||| || ||||| || || ||||||||| | Sbjct 53995 AGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGG 53936 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||| | ||||| ||| ||| || | ||||||||| | ||| | ||| || Sbjct 53935 ATCTTGCTCTTAACGTTGT-CGATGGTATCGCTCGACTCGACTTCCAAGGTAATCGTCTT 53877 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||||||| || || || |||||||| Sbjct 53876 TCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||| |||||||| | |||||||| || ||||| |||||||| | Sbjct 54529 CCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGAC 54470 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || | ||| ||||| || ||||||| || ||||| || || || Sbjct 54469 AAAGTTCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGGG 54410 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| || || ||||| |||| || | || |||| | ||||| Sbjct 54409 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG-TCAATAGTATCCGAAGATTCGAC 54351 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | ||| || ||||||| || || || || |||||||| Sbjct 54350 TTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||| |||||||| | || ||| ||| || || || ||||| Sbjct 53587 GTGGATTCCTTCTGAATGTTGTAATCCGAGAGAGTTCGACCATCTTCAAGTTGCTTTCCG 53528 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||||||| |||||||| || || || || ||||||||| || || |||| Sbjct 53527 GCGAAGATCAATCGTTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTG 53468 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | ||||||||||| || | ||| || ||||| || || Sbjct 53467 ACATTGTCGATTGTGTCGGAGGACTCGACTTCGAGAGTGATCGTCTTTCCGGTGAGGGTC 53408 Query 127097 TTT 127099 ||| Sbjct 53407 TTT 53405 >seq101 Length=212447 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | | ||| ||||| || | |||||||| || || || ||||| || Sbjct 117773 CCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAA 117832 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || |||||||| || ||| |||| | |||||||||||| ||||| Sbjct 117833 AGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGA 117892 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||||| ||| || ||||| |||| |||| |||||||| |||||| Sbjct 117893 ATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCCGAGGACTCGAC 117951 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAG 127092 |||| ||| | || || || || || Sbjct 117952 CTCGAGGGTGATGGTCTTACCCGTGAG 117978 >seq334 Length=295082 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || |||||||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 55646 CCACCACGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 55705 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| |||||||||||||||| || || || Sbjct 55706 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGG 55765 Query 127007 ATGCCCTCCTTGTC 127020 || || |||||||| Sbjct 55766 ATACCTTCCTTGTC 55779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495842904160