Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq20 120 3e-22 seq223 95.1 1e-14 >seq20 Length=67849 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || | ||||| || || || || || |||||||| || || || ||||| Sbjct 53620 ATACCACCCCGCAACCTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCC 53561 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | ||| ||||| ||| | |||||||||||||| || || Sbjct 53560 GAGAGAGTTCGACCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGG 53501 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || ||||| || |||| || | |||||||| |||||| Sbjct 53500 GGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATTGTGTCGGAGGACTCG 53441 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTT 45326 ||||||||||| | ||| || ||||| || || ||| Sbjct 53440 ACTTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTT 53405 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||| ||||| || || ||| | ||| || ||||| || Sbjct 54277 TGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGTCCGTCTTCCAACTGC 54218 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||||||| |||||||| || |||||||| || || || || ||||| Sbjct 54217 TTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGGATTTTC 54158 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | |||||| |||||||||||||||||||| | || || || || Sbjct 54157 GATTTGA-CGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGAGTGATAGTCTTTCCAGT 54099 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 54098 GAGTGTCTTGACGAAGATCTGCAT 54075 Score = 102 bits (112), Expect = 7e-17 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || | ||||| || |||||||| || || || || ||| Sbjct 54076 ATACCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCG 54017 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | || || ||| || | |||||||| ||| | ||||| || |||||||| | Sbjct 54016 --GACAGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAG 53959 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||| ||||| || || || || || || | || | || | ||| ||| ||| Sbjct 53958 GAGGAATTCCTTCCTTGTCCTGGATCTTGCTCTTAA-CGTTGTCGATGGTATCGCTCGAC 53900 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | |||| ||| || ||||| ||||| || || || || ||||| Sbjct 53899 TCGACTTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | ||| || || || ||||| || || || ||||| Sbjct 54532 ATACCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCC 54473 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || ||||| || ||||| || | ||||| ||||||||||| ||| Sbjct 54472 GACAAAGTTCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGC 54413 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || ||||| || |||| || | || | || || ||||| || Sbjct 54412 GGGATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCAATAGTATCCGAAGATTC 54354 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || | ||| || ||||| | || || || || || ||||| Sbjct 54353 GACTTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 |||| || || ||||| ||||| || || ||| || || || | ||| || | || Sbjct 53821 TGCAAGGTAGACTCCTTCTGGATGTTGTAGTCG--GAAAGTGTTCGGCCATCTTCGAGTT 53764 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 | ||||| ||| | |||||||||||||| || || || || || ||||| || ||||| | Sbjct 53763 GCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGGATACCCTCTTTGTCCTGAATCT 53704 Query 45256 TTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 | |||| || | || | ||||| ||||| ||||| || | || | || || ||| Sbjct 53703 TAGACTTGA-CGTTGTCGATAGTGTCCGAAGATTCGACCTCCAAGGTGATTGTCTTTCCG 53645 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || | || || || || |||||||| Sbjct 53644 GTCAAGGTCTTGACGAAGATTTGCAT 53619 >seq223 Length=304017 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 123306 ATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATG 123365 ||||| || ||||| ||||||| ||||| | |||||| | | || | ||| Sbjct 175592 ATCTACCTCGAACCTTGGCACGCGGATGTCTTCGATTTCATCGACTTGCGAAAGAACCAC 175651 Query 123366 GGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTT 123425 || ||||||| ||| || || ||||| ||||| | ||| | || || ||||| Sbjct 175652 GGCAAGGAAGAAGTCCGAGCTCGAGACTTGTTCTACGCGCTCTGGATTCCGGACATGTTT 175711 Query 123426 ATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGC 123485 |||||||| ||| | ||| || | ||| || | ||||||||| | ||| ||||| Sbjct 175712 ATGCGACGTGTAGAGTCCGATGGAGACTGGGCGTTGATGTGTCCCAACGAGTGCCCCGGA 175771 Query 123486 TTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGC 123545 ||| ||||||| ||||||| || ||||| |||||| | || || || |||||| Sbjct 175772 TTGTCCGACGTTCACGGCAAGGCTTTCGACGAACTGTACGAAAAGTATGAACGTGAAGGC 175831 Query 123546 AA 123547 || Sbjct 175832 AA 175833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451998487866640