Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq223 125 1e-23 >seq223 Length=304017 Score = 125 bits (138), Expect = 1e-23 Identities = 468/718 (65%), Gaps = 18/718 (3%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || |||||||||| ||||| | ||| ||| | ||| || ||||||||||||||| Sbjct 177062 TCAACCGTGAACTTGATGGCATCGACGATAGGTCGAGTTCGCAAGTAGTACATGCCGGTC 177003 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCG 203962 || | ||||||| ||| ||||| | |||||| || | || | | || | |||| | Sbjct 177002 TTCAATCCCTTCTTCCAGCCGTAGAAGTGCATAGACGTGAGCTGACCCATGGAAGGGTTG 176943 Query 203963 GCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCAT 204021 | |||||||||||| || || || || ||||| |||||| || || || || || | Sbjct 176942 GTCATGTGAATGTTGAGCGATTGCGACTGATCGAT-AAAGGCTCCTCGGTCCGCAGCGAG 176884 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGTT 204080 || ||| ||| ||||| || ||||| || |||||| | | || | || | Sbjct 176883 ATCGATGATGCCTTTCTGGCTGATTTCCCAAACGGTCTTGTAGATACCCTTTAGT-TCCG 176825 Query 204081 GAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 ||| | | | | || || || || || || ||| || | || || || || Sbjct 176824 CAGGGATGT-TGGGGATGTTTTGAATGGAACCACCGTGGGCGATGATTCGGTTCTTCATC 176766 Query 204140 TCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGA 204199 || || |||| | || | ||| || || |||| || ||| || || ||| Sbjct 176765 TCGTCGTCCCAAAGACCAAGGTTGACCAAGTCACGCAACAACCAAGGGCAGACGACCTGG 176706 Query 204200 AAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCG 204259 || || |||| || || | ||| | | | | |||| |||| | |||||||| ||| Sbjct 176705 AAATCACCGGCGAGTACACGTCGAGAGTAGATGTTGCTGGTATACGGTTCGAAGCATTCG 176646 Query 204260 TTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTG 204319 || || || ||||||| || || || |||||||| || | || || ||||| Sbjct 176645 TTCCAACCCAAGATCTGAGACGTCGATGCGGTTGGCATGGGGGCAACTAGGAGCGAGTTT 176586 Query 204320 CGCACACCGTATTTTTG--GACCCTGCGCTTCAGAGAGGTCCAGTC---GTGCATCGCAC 204374 |||| ||| | | ||| || | || ||||| | | |||||| | | | | || Sbjct 176585 CGCAAACC--AGTCTTGGCGATCTTGGCCTTCAAGGTCGCCCAGTCCCAGAG-AGAGGAC 176529 Query 204375 TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGT 204434 ||| | | |||||| | |||| | || || ||||||||||| | || ||| | || Sbjct 176528 GGGG--TAATGCCCCAGAGGTCGTATTGCAACTTGCCTTGACTGGCAGGCGAGCCTTCGT 176471 Query 204435 ACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGT 204494 | ||| | ||||| || ||||||||| | | | || || | | ||| | || Sbjct 176470 AAGTCTGGTAAGGACCTTCAACTTCTGCCATTTCGGAAGAAGCTTCGAGTGCGGCGTGGT 176411 Query 204495 ACATGGTCTCAAAGATCTGAACGTTTAATCTGGCG-GCCTCCGTTCCGTCAAACGCCA 204551 | ||||| || |||||||| ||||| | | || || ||||| | ||||| || |||| Sbjct 176410 AGATGGTTTCGAAGATCTGCACGTTGAGT-TGTCGAGCCTCGGGACCGTCGAAAGCCA 176354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795146910507040