Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq101 138 3e-27 seq20 134 3e-26 seq334 96.9 8e-15 >seq101 Length=212447 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || |||| ||| | ||| | ||| |||||||| |||| ||||||||| | | || Sbjct 117778 TCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 117837 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| ||||| || |||||||||||||| |||||||| || ||| |||||| Sbjct 117838 TCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGAATTCC 117897 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 117898 TTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAG 117957 Query 199588 CGTGATCGTCTTACCCGTGAG 199608 ||||| |||||||||||||| Sbjct 117958 GGTGATGGTCTTACCCGTGAG 117978 >seq20 Length=67849 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || | |||||| ||||| || | ||||||||| | || ||| | |||||| Sbjct 54058 AGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGACCATCT 53999 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| ||||||||||| || | |||||||||||| ||| ||||||||| ||| Sbjct 53998 TCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 53939 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| || | | || || ||||| || |||||| Sbjct 53938 TGGATCTTGCTCTTAACGTTGTCGATGGTATCGCTCGACTCGACTTCCAAGGTAATCGTC 53879 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || || || Sbjct 53878 TTTCCGGTCAGAGTCTTGACGAAGATCTG 53850 Score = 123 bits (136), Expect = 6e-23 Identities = 150/203 (74%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 |||||||| ||||||||||| || ||||| || | |||||| || | | ||| | ||| Sbjct 53605 CTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAGAGAGTTCGACCA 53546 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||| || ||||||||||||||||| | || ||||| || || ||||||||| Sbjct 53545 TCTTCAAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGAATTCCTTCCTTG 53486 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||||||||| ||| || |||| ||||| | | || || || | |||||| Sbjct 53485 TCCTGAATCTTGGACTTGACATTGTCGATTGTGTCGGAGGACTCGACTTCGAGAGTGATC 53426 Query 199595 GTCTTACCCGTGAGAGT-TTTCA 199616 ||||| || ||||| || ||||| Sbjct 53425 GTCTTTCCGGTGAGGGTCTTTCA 53403 Score = 113 bits (124), Expect = 1e-19 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511 ||||||||| ||||||||| || ||||||| |||||||||||| ||||| | ||||||| Sbjct 54775 TGTAGTCAGACAAAGTCCTACCGTCTTCCAACTGCTTTCCGGCAAAGATCAATCGCTGCT 54716 Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571 |||| || ||| |||||| ||||||||||| ||| || || | || || | Sbjct 54715 GGTCGGGGGGAATGCCTTCTTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTATCCG 54656 Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 | || || ||||||||||| ||||| || || ||||| Sbjct 54655 ACGACTCGACTTCCAACGTGATAGTCTTTCCGGTCAGAGT 54616 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || || | ||| | || |||||||| |||| ||||||||| | | || Sbjct 53840 TCGGAGTCGGAGAACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGTGT 53781 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| || ||||||||||||||||| | || ||||| || || || || Sbjct 53780 TCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGGATACC 53721 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||||||||| ||| ||| |||| ||||| | | ||| || ||||| Sbjct 53720 CTCTTTGTCCTGAATCTTAGACTTGACGTTGTCGATAGTGTCCGAAGATTCGACCTCCAA 53661 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || ||||| Sbjct 53660 GGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATTTG 53622 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| | || || || | ||| | |||||||||||| |||| ||||||||| | | || Sbjct 54296 TCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGCGT 54237 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||| ||||||| |||||| || ||||| || | ||||||||||| || ||| || Sbjct 54236 TCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGAATGCC 54177 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| || || || ||| || | |||||| | | || || || | Sbjct 54176 CTCCTTGTCCTGGATTTTCGATTTGACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAG 54117 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || || || Sbjct 54116 AGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTG 54078 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || ||| | ||||| || |||||||| || | |||||| || | |||||| Sbjct 54524 TCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGACAAAGT 54465 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || |||| ||||||||| || ||||| | || |||||||| || || || Sbjct 54464 TCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGGGATGCC 54405 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||||||||| ||| ||| || | || || | | ||| || || | Sbjct 54404 CTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGACTTCAAG 54345 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || | || || || || || || Sbjct 54344 GGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTG 54306 >seq334 Length=295082 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 || || ||| | ||| | |||||||||||| |||| ||||||||| | || || | || Sbjct 55657 TCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCC 55716 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| |||||||| ||||||||||| | ||||||||||| || || ||||| Sbjct 55717 ATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTT 55776 Query 199534 CTCCTGAATCT 199544 || ||||||| Sbjct 55777 GTCTTGAATCT 55787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178909002485878