Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555
.1_202015-11-17] 834 sequences; 24,807,186 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq20 129 7e-25
seq334 104 3e-17
seq101 98.7 1e-15
>seq20
Length=67849
Score = 129 bits (142), Expect = 7e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | ||| | |||| |||||| || ||||| || || |||||||||||
Sbjct 54073 CCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGAC 54014
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| || | || || ||||| || |||||||| ||||| ||||||||||| | ||
Sbjct 54013 AGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGA 53954
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545
| | ||||||||| |||||| |||| | ||| | | | || |||||||| || ||
Sbjct 53953 ATTCCTTCCTTGTCCTGGATCTTGCTCTT-AACGTTGTCGATGGTATCGCTCGACTCGAC 53895
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| || || || || || ||||| || || || ||||| |||||
Sbjct 53894 TTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847
Score = 125 bits (138), Expect = 8e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| |||| || ||||| |||| ||||| || |||||| ||||| |||||||||||
Sbjct 54301 CCGCCTCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 54242
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || || |||| || | ||||||||| ||||| ||||| ||||||||||| | ||
Sbjct 54241 AGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGA 54182
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545
| || |||||||||| ||| ||| |||| ||| | | | ||||| || || ||
Sbjct 54181 ATGCCCTCCTTGTCCTGGATTTTCGATTTGA-CGTTGTCAATGGTGTCCGAAGACTCGAC 54123
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||| || || || || || || || || ||||| |||||
Sbjct 54122 TTCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCAT 54075
Score = 114 bits (126), Expect = 1e-20
Identities = 153/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| ||||| ||| |||||| ||||| ||||||||||| || || || | || |||
Sbjct 53827 ACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGTGTTCGGCCATCTTCG 53768
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| ||||| |||||||| ||||| || ||||| || | || | | ||| ||||||
Sbjct 53767 AGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGGATACCCTCTTTGTCCTGA 53708
Query 46505 ATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| ||||| ||| | | | ||||| ||||| || |||| ||||| || ||
Sbjct 53707 ATCTTAGACTTGA-CGTTGTCGATAGTGTCCGAAGATTCGACCTCCAAGGTGATTGTCTT 53649
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| || || || |||||||||||
Sbjct 53648 TCCGGTCAAGGTCTTGACGAAGATTTGCAT 53619
Score = 82.4 bits (90), Expect = 9e-11
Identities = 116/163 (71%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 46413 TATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCT 46472
|| ||||||| || | ||| | |||| || | |||||| ||||| || ||||| ||||
Sbjct 54778 TACTGTAGTCAGACAAAGTCCTACCGTCTTCCAACTGCTTTCCGGCAAAGATCAATCGCT 54719
Query 46473 GCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGT 46532
||||||||| || | || || |||||| |||||| ||||| | | | ||| |
Sbjct 54718 GCTGGTCGGGGGGAATGCCTTCTTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTAT 54659
Query 46533 CGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGT 46575
| ||| || || |||| |||||| || || || ||||| ||
Sbjct 54658 CCGACGACTCGACTTCCAACGTGATAGTCTTTCCGGTCAGAGT 54616
>seq334
Length=295082
Score = 104 bits (114), Expect = 3e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 46376 AAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGC 46435
|| ||||| |||| ||||| || |||||| ||||| ||||||||||| || || ||
Sbjct 55655 AATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGG 55714
Query 46436 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCC 46495
| || |||||||||||||||||||| ||||| ||||||||||| | || | | |||
Sbjct 55715 CCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCC 55774
Query 46496 TTGTC 46500
|||||
Sbjct 55775 TTGTC 55779
>seq101
Length=212447
Score = 98.7 bits (108), Expect = 1e-15
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
||| |||| ||||| ||| |||||| ||||| |||||||| || || || || | ||
Sbjct 117787 CAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGACCATC 117846
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|||||||| ||||||||||| || | |||||||| || | || | | ||||||||
Sbjct 117847 TTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGAATTCCTTCCTTGTC 117906
Query 46501 CATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGG 46559
| |||||| ||||| ||| | | | ||||| || || || || | |||||||
Sbjct 117907 CTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGG 117965
Query 46560 TTTTGCCCGTCAG 46572
| || ||||| ||
Sbjct 117966 TCTTACCCGTGAG 117978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565232507389680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |