Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq20 138 1e-27 seq101 114 1e-20 seq501 84.2 2e-11 seq334 84.2 2e-11 >seq20 Length=67849 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || ||||| |||| |||||| | | Sbjct 54075 ATGCAGATCTTCGTCAAGACACTCACTGGAAAGACTATCACTCTCGAAGTCGAGTCTTCG 54134 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | ||| ||||||| ||||| ||||| ||||| | ||||| Sbjct 54135 GACACCATTGACAACG-TCAAATCGAAAATCCAGGACAAGGAGGGCATTCCACCTGACCA 54193 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| ||| ||||| ||| |||| |||| || || || ||||||||| Sbjct 54194 GCAGCGATTGATTTTCGCTGGCAAGCAGTTGGAAGACGGACGAACGCTTTCCGACTACAA 54253 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| |||| ||||| |||| ||| ||||||| Sbjct 54254 CATCCAGAAGGAGTCGACTTTGCACTTGGTTTTGCGATTGCGAGGCGG 54301 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || || ||| | || |||||| | | | Sbjct 53847 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACGATTACCTTGGAAGTCGAGTCGAGC 53906 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | | || || | ||| ||||| || |||||||| | ||||| Sbjct 53907 GATACCATCGACAACGTTAAGAGCAAGA-TCCAGGACAAGGAAGGAATTCCTCCTGACCA 53965 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| ||| || |||||||| || || | || || || ||||||||| Sbjct 53966 GCAGCGTTTGATTTTCGCCGGAAAACAGCTTGAAGATGGTCGAACTCTGTCCGACTACAA 54025 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || |||||| |||| |||||||||| || ||| | |||| || Sbjct 54026 CATTCAGAAGGAATCGACTTTGCATTTGGTCCTTCGTCTCCGAGGAGG 54073 >seq101 Length=212447 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 |||||||| || ||||||||| |||| |||||| || | |||| | | | |||| | || Sbjct 117978 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACG-TCAA 117920 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || |||| ||||| || |||||||| | || || ||||| ||||| | ||| || Sbjct 117919 GTCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAGCGACTCATCTTCGCCGG 117860 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||||||||| || || | || ||||| |||||||||||||| ||||| | || | Sbjct 117859 CAAACAGCTCGAAGATGGTCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCTACTTT 117800 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||| || | || |||| || Sbjct 117799 GCACTTGGTCTTGAGGCTGCGAGGTGG 117773 >seq501 Length=137356 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| | | ||| ||| | || ||||| | ||| ||||| |||||| || Sbjct 93375 GTAGGTGTCGATCAAGAGCGAGTACGTCTCGGAGTGGATGTTTTCCATCATGATTTGGAA 93434 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||| || || ||| | || ||||| | ||| || |||||||| || Sbjct 93435 ACCGTAGAAGAACTTGGCTTCGGCGCATTGAACTTCAGAGGAGAATCGTTCGACCAGGTT 93494 Query 133287 TTCGTTGACGATGCCGTCG 133305 |||||||||||| |||||| Sbjct 93495 TTCGTTGACGATACCGTCG 93513 >seq334 Length=295082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| || || || ||| | ||||| ||||| | || | ||| ||||| ||||| || Sbjct 55779 GACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAA 55720 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | || ||||| ||||||||||||||| ||||| |||| |||| ||||| || Sbjct 55719 GATGGCCGAACCCTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTGGTCTTG 55660 Query 38457 CGTTTGAGAGGCGG 38470 || ||| | || || Sbjct 55659 CGATTGCGTGGTGG 55646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167585698560