Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq20 105 3e-17 >seq20 Length=67849 Score = 105 bits (116), Expect = 3e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||| || || || ||||| | || || || || Sbjct 53847 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACGATTACCTTGGAAGTCGAGTCGAGC 53906 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || |||| || || || || |||||||||||||||||||| || Sbjct 53907 GATACCATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 53966 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| |||||| | || ||||| ||||||||||| ||||| || | || || || Sbjct 53967 CAGCGTTTGATTTTCGCCGGAAAACAGCTTGAAGATGGTCGAACTCTGTCCGACTACAAC 54026 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 54027 ATTCAGAAGGA 54037 Score = 102 bits (112), Expect = 3e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 391065 AAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCT 391124 || || || || || || || || ||||| || || || || || || | || || | Sbjct 53406 AAGACCCTCACCGGAAAGACGATCACTCTCGAAGTCGAGTCCTCCGACACAATCGACAAT 53465 Query 391125 ATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTC 391184 | || || ||||| || |||||||||||||| |||||||| ||||| || || ||| Sbjct 53466 GTCAAGTCCAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAGCAACGATTGATCTTC 53525 Query 391185 TCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCA 391244 | || || |||||||||||||| ||||| | ||||||| || ||| | ||||| | Sbjct 53526 GCCGGAAAGCAACTTGAAGATGGTCGAACTCTCTCGGATTACAACATTCAGAAGGAATCC 53585 Query 391245 ACACTTCAC 391253 || || ||| Sbjct 53586 ACTCTCCAC 53594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975697288214072