Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq445 122 7e-22 seq6 114 1e-19 >seq445 Length=279476 Score = 122 bits (134), Expect = 7e-22 Identities = 360/547 (66%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 517766 AAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAAT 517825 || || ||||||||||| || | | || |||||||| || | ||| |||||| Sbjct 155331 AAGACCTTTTCAACGGGGTCCATGGTGGATCGGAACAAGTCCTGGCACAATTCCTCGAAT 155272 Query 517826 TTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAA 517883 |||| || ||| || | || || || || |||||||||| || || | ||| | Sbjct 155271 CGGGCTCGGGT--GAGCGAGGTGTAGAAGTCGATACCTTCGAACAGCGAGTCGATTTCGA 155214 Query 517884 TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTC 517943 ||| || || | | ||| || | | || || || |||||||| || || | | || Sbjct 155213 TCGAGGTCTGGGCGGCAGAGGACAAGGTTCGCTTTGCTCGTTCACAGGCGGTTCGCAATC 155154 Query 517944 TTCGTAAGGCTTTTGCTGATTGA-TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCA 518002 ||| | |||| || | | || |||| || | || | |||| |||||| || | | Sbjct 155153 GTCGGAGGGCTCGGGC-GTTGGAGCTCAAGTCCTTCTTGTTCTTTCGCTTGAATTCCTGA 155095 Query 518003 ACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGAC 518062 ||| | | || | || || ||||| |||||||| ||||| | || | || | Sbjct 155094 ACAAAGTGGTTGACCAATCGGTTGTCAAAGTCTTCACCACCCAAGTGGGTGTCACCGGCG 155035 Query 518063 GTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCA 518122 ||||| | |||| ||| | || ||||||| | ||| || | ||||| |||||| Sbjct 155034 GTAGCCTTGACTTCGAAGATACCCTCTTCAATGGTCAAGAGGGAAACATCGAAAGTTCCA 154975 Query 518123 CCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCAT 518180 || |||| ||| || || | || ||| |||| || || || || || | ||| | Sbjct 154974 CCTCCCAAATCGAAGATCAAGACGTTC--TTCTCGCCCTCGGATTTCTTGTCCAAACCGT 154917 Query 518181 ACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTC 518240 | |||| ||| || || || || || || || |||| ||| || || | ||| | || Sbjct 154916 AGGCAATAGCGGCGGCGGTAGGCTCGTTGATGATTCGCAAGACGTTCAAACCCGAGATCA 154857 Query 518241 TTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAA 518300 || ||||| || ||||| |||| || || ||||| || || || || || || | || Sbjct 154856 AACCGGCATCCTTGGTGGCCTGTCGCTGCGAGTCGTTGAAGTAGGCGGGGACGGTGACAA 154797 Query 518301 CGGCATC 518307 |||| || Sbjct 154796 CGGCGTC 154790 >seq6 Length=76207 Score = 114 bits (126), Expect = 1e-19 Identities = 357/543 (66%), Gaps = 11/543 (2%) Strand=Plus/Plus Query 517587 CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTT 517646 ||||| | || || || | |||||||| || || || |||||||| || || | || Sbjct 72746 CAAGA-TGGCGGCCTGGACGGCAGCACCGTACGCGACGGCTTCATCCGGGTTGATGCTTC 72804 Query 517647 CATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAG 517706 || ||| ||| ||||| || | |||| || | | | ||| ||||| || | Sbjct 72805 GGTTGGGTTCCCGACCGTTGAAGAAGTCGGAAACGAGCTTTTGGATCTTGGGAATTCGGG 72864 Query 517707 ATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA 517766 || || || || | || || || | |||| ||| || || | || ||||| | Sbjct 72865 TGGAACCACCGACGAGGACGATCTCGTTCACCGTTGACTTGTCAATCTTGGAATCACGCA 72924 Query 517767 AAACTTTTTCAAC-GGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAAT 517825 | || ||||| || |||| || | | | || ||||||||| ||| | |||||||||| Sbjct 72925 AGACCTTTTCGACCGGGTCCATGGTCTG-TCGGAACAAGTCTTGACACAATTCTTCGAAT 72983 Query 517826 TTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAA 517883 ||||| || || |||| | || || || || ||||| ||||| ||||| | ||||| Sbjct 72984 CGAGCTCGGGT--GATTGACGTGTAAAAGTCGATACCTTCAAACAAGGAATCGATTTCAA 73041 Query 517884 TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTC 517943 |||| || |||| | ||||| | | || || || ||||||||||| || | | || Sbjct 73042 TCGTCGTCTGAGCGGCGGAAGACAAGGTTCGCTTGGCTCGTTCACATGCCGTTCGCAATC 73101 Query 517944 TTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTC 518001 ||| | ||| || |||| | ||| | || | |||| ||| || |||| Sbjct 73102 GTCGGAGCGCTCGGGC--ATTGGAGGAGATATCCTTCTTGTTCTTTCGCTTAAATTCTTG 73159 Query 518002 AACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGA 518061 ||| | | || || || || ||||| |||||||| ||||| | ||| | || | Sbjct 73160 GACAAAGTGGTTGACGAGTCGGTTGTCAAAGTCTTCACCACCCAAGTGAGTGTCACCCGC 73219 Query 518062 CGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCC 518121 || || | |||| ||||| || ||||| | | ||| || | ||||| ||||| Sbjct 73220 GGTCGCCTTGACTTCGAAAATACCTTCTTCGATGGTCAAGAGGGAAACATCGAATGTTCC 73279 Query 518122 ACC 518124 ||| Sbjct 73280 ACC 73282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780781014172804