Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq445 360 2e-94 seq6 336 3e-87 seq1 185 1e-41 >seq445 Length=279476 Score = 360 bits (398), Expect = 2e-94 Identities = 827/1237 (67%), Gaps = 15/1237 (1%) Strand=Plus/Minus Query 6581 TTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTA 6640 || |||||||| || || |||||| || || || || || || |||| ||||| Sbjct 155947 TTGTACTTTTCAGCCTCGGAGACCATTCGCTCGATTTCCTCCTTGGACAATCGACCCTTG 155888 Query 6641 TCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTC 6700 || || || || || ||||| | || || || || | ||| || | || || ||| Sbjct 155887 TCGTTGGTGATGGTGATCTTGTTGGTCTTGCCGGAAGACTTGTCGGCGGCGGAGACGTTC 155828 Query 6701 AAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCG 6760 || ||||| || || |||| ||||| | || | || || || || |||||| ||| Sbjct 155827 AAGATACCGTTGGCGTCAATGTCGAAGGTGACTTCGATCTGGGGA--ACACCTCGGGGCG 155770 Query 6761 ---GCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCG--CCTTCT 6815 | || ||||| | | || || | || || || || ||| ||| | || Sbjct 155769 CGGGGGGGGATACCGGAAAGGTCGAACTTGCCGAGCAAGTTGCAGTCCTTCGTACGGGCT 155710 Query 6816 TACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTGTGCCGTTGA 6873 ||||||||||| ||||| | || | ||||| || ||||| || || || Sbjct 155709 --CGTTCACCTTCGTAGACCTGGATCAAGACACCG--GGCTGATTGTCCGAGTAGGTCGA 155654 Query 6874 GAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAAT 6933 |||||||| ||||| | || | || || |||| | || | ||||||||| | Sbjct 155653 GAAGATTTCAGACTTCTTGGTGGGGACGGTGGTGTTTCGCTTGATCAACGGGGTCATGAC 155594 Query 6934 ACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTG 6993 |||||| || |||| ||| |||| || | || || | | |||| ||| || Sbjct 155593 ACCACCGGCGGTCTCGATACCAGTCGACAAGGGAGCGACATCGAGCAACAACAAGTCCTG 155534 Query 6994 AACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGAC 7053 || ||||| || ||||||||||| ||||| | || ||||| ||||| Sbjct 155533 GGTGGAGGACGAGGTGTCACCGGTCAAGATGGCGGCCTGGACGGCGGCACCGTAGGCGAC 155474 Query 7054 CGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACAT 7113 || ||||||||||| |||| | || ||||| |||||| || | || || | | Sbjct 155473 GGCTTCATCGGGGTTGATCGATCGGTTGGGTTCTCGACCGTTGAAGAAGTCGGAAACGAG 155414 Query 7114 TTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGA 7173 | || || || |||||||| || || |||||||| | ||||| || || || ||| Sbjct 155413 CTTCTGGATCTTGGGGATTCGGGTAGAACCACCGACGAGGACGATCTCGTTGACGGACGA 155354 Query 7174 TTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAA 7233 || |||||||| |||||||| | ||||| || || ||||| |||||||| Sbjct 155353 CTTGTCGATCTTGGAGTCTCGCAAGACCTTTTCAACGGGGTCCATGGTGGATCGGAACAA 155294 Query 7234 GTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTC 7293 |||| |||| |||||| || || || ||||| | || || ||||| || | || || Sbjct 155293 GTCCTGGCACAATTCCTCGAATCGGGCTCGGGTGAGCGAGGTGTAGAAGTCGATACCTTC 155234 Query 7294 GTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCG 7353 | | | ||| || ||||| || | || || || | || || || ||||||||||| || Sbjct 155233 GAACAGCGAGTCGATTTCGATCGAGGTCTGGGCGGCAGAGGACAAGGTTCGCTTTGCTCG 155174 Query 7354 CTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATG 7413 ||||| || ||||| || || || ||||| || | ||| | | || ||||| | Sbjct 155173 TTCACAGGCGGTTCGCAATCGTCGGAGGGCTCGGGCGTTGGAGCTCAAGTCCTTCTTGTT 155114 Query 7414 TTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACC 7473 || || || || || | | ||||| | | || || || ||||||||||| Sbjct 155113 CTTTCGCTTGAATTCCTGAACAAAGTGGTTGACCAATCGGTTGTCAAAGTCTTCACCACC 155054 Query 7474 CAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAA 7533 |||||| || || || ||||| || |||||||| |||||||| |||||||| | || | Sbjct 155053 CAAGTGGGTGTCACCGGCGGTAGCCTTGACTTCGAAGATACCCTCTTCAATGGTCAAGAG 154994 Query 7534 CGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTT 7593 |||||||| || || ||||| |||| || || || | |||||| | ||| | || Sbjct 154993 GGAAACATCGAAAGTTCCACCTCCCAAATCGAAGATCAAGACGTTCTTCTCGCCCTCGGA 154934 Query 7594 GTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGAC 7652 ||||| || | |||||| || ||||| || || || || || || || || || ||||| Sbjct 154933 TTTCTTGTCCAAACCGTAGGCAATAGCGGCGGCGGTAGGCTCGTTGATGATTCGCAAGAC 154874 Query 7653 AGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGT 7712 ||||| || | || | ||||| || || || ||||| ||||| ||||| |||| Sbjct 154873 -GTTCAAACCCGAGATCAAACCGGCATCCTTGGTGGCCTGTCGCTGCGAGTCGTTGAAGT 154815 Query 7713 AGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATAT 7772 |||| ||||| || || || |||||| |||| | ||| | || | || ||| | | Sbjct 154814 AGGCGGGGACGGTGACAACGGCGTCCTTGACGGTTCCACCCAAGTAGGCCTCGGCGGTCT 154755 Query 7773 CTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | ||||| ||| || ||||| || || |||||||| Sbjct 154754 CCTTCATCTTGAGCAGGACCATGGAGGAGATCTCTTC 154718 >seq6 Length=76207 Score = 336 bits (372), Expect = 3e-87 Identities = 897/1373 (65%), Gaps = 71/1373 (5%) Strand=Plus/Plus Query 6499 GACCGT-TCCTTTCATTTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTT 6557 |||||| | ||| | ||| ||| |||| ||||||||||||||| |||| || | Sbjct 72227 GACCGTGTTCTTCAAGTTG-TAAGCGTAGGATTCGAGACCATTCTTGGCCTGGA---TGC 72282 Query 6558 TCGCG---TACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAA 6614 |||| | | || || || | || |||||||| || || | ||| |||| Sbjct 72283 GCGCGGCTTCCGCCTCGTCCTCGGCCTTGTACTTTTCAGCCTCGGCCAACATGCGCTCAA 72342 Query 6615 TGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCG 6674 | || || || || | || ||||| || || || || || ||||| | || || | Sbjct 72343 TCTCCTCCTTGGACAGTCGACCCTTGTCGTTGGTGATGGTGATCTTGCTGCTCTTTCCGG 72402 Query 6675 AGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACAT 6734 | |||| || | ||| || ||||| ||||| || || |||| |||||| | || | Sbjct 72403 AACCCTTGTCGGCCGCAGAGACGTTCAAGATACCGTTGGCGTCAATGTCGAACGTAACCT 72462 Query 6735 TAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTA 6794 || || || ||| | || |||| |||||||| | || || ||| |||| || | Sbjct 72463 CGATCTGAGGGACACCTCGTGGCGCGGGAGGAATACCGGACAAGTCGAATTTACCGAGCA 72522 Query 6795 AACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTT 6854 | || ||| | | | ||||||||||||| |||||| || ||| | || | Sbjct 72523 AGTTGCAGTCCTTGGTTCGCGCACGTTCACCTTCAAAGACTTGGATCAACACACCGGGCT 72582 Query 6855 GATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCG 6914 | || || || |||||||||| ||||| | || | ||| || |||| | Sbjct 72583 GGTTGTCAGCGTAGGTGGAGAAGATTTCAGACTTCTTGGTCGGGACCGTGGTGTTTCGCT 72642 Query 6915 GAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGT 6974 || | ||||||||| | ||| || || |||| || | |||| |||| |||| Sbjct 72643 TGATCAACGGGGTCATGACACCTCCGGCCGTCTCGATACCCATCGACAAGGGTGCAACGT 72702 Query 6975 CCAAGAGTAACAGGTCTTGAACA---GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTT 7031 | | | |||| ||||||| || | | ||||| || ||||||||||| | Sbjct 72703 CGAGCAACAACAAGTCTTGAGTCTTGGACGAGGTG---TCACCGGTCAAGATGGCGGCCT 72759 Query 7032 GGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTAC 7091 |||| | || ||||| ||||| || ||||| ||||| || || || |||| || Sbjct 72760 GGACGGCAGCACCGTACGCGACGGCTTCATCCGGGTTGATGCTTCGGTTGGGTTCCCGAC 72819 Query 7092 CGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCA 7151 |||| || | || || | | | ||| || || || ||||| || || |||||||| | Sbjct 72820 CGTTGAAGAAGTCGGAAACGAGCTTTTGGATCTTGGGAATTCGGGTGGAACCACCGACGA 72879 Query 7152 AAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAG 7211 ||||| || ||||| | || || || ||||| || || || | |||||||| | Sbjct 72880 GGACGATCTCGTTCACCGTTGACTTGTCAATCTTGGAATCACGCAAGACCTTTTCGACCG 72939 Query 7212 GTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGG 7271 | ||||| | ||||||||||| ||||| ||| || || || || ||||| || | Sbjct 72940 GGTCCATGGTCTGTCGGAACAAGTCTTGACACAATTCTTCGAATCGAGCTCGGGTGATTG 72999 Query 7272 ATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCG 7331 | || || || || | || || | || ||||| |||||||| || || || || | | Sbjct 73000 ACGTGTAAAAGTCGATACCTTCAAACAAGGAATCGATTTCAATCGTCGTCTGAGCGGCGG 73059 Query 7332 AAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGT 7391 |||| || |||||||| || || ||||| |||||||| || || || || || || | | Sbjct 73060 AAGACAAGGTTCGCTTGGCTCGTTCACATGCCGTTCGCAATCGTCGGAGCGCTCGGGCAT 73119 Query 7392 TACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTC 7451 | ||| ||||| ||||| | || || ||||| |||| ||||| | ||||| Sbjct 73120 TGGAGGAGATATCCTTCTTGTTCTTTCGCTTAAATTCTTGGACAAAGTGGTTGACGAGTC 73179 Query 7452 TCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGA 7511 || || ||||||||||||||||| || || ||||||||||| |||||||| || | Sbjct 73180 GGTTGTCAAAGTCTTCACCACCCAAGTGAGTGTCACCCGCGGTCGCCTTGACTTCGAAAA 73239 Query 7512 TACCTCCTTCAATGTTTAACAACGAAACATCAA--------------------------- 7544 ||||| |||| ||| | || | |||||||| | Sbjct 73240 TACCTTCTTCGATGGTCAAGAGGGAAACATCGAATGTTCCACCTGCGAGAAGCCGTCAGT 73299 Query 7545 --ACGT-----------------------AC-CACCACCCAGGTCAAAAATGAGTACGTT 7578 |||| || |||| || || ||||| || | ||||| Sbjct 73300 ATACGTCACCTCCAGTCAGAATCGACGCAACTCACCTCCAAGATCAAAGATCAAGACGTT 73359 Query 7579 CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 | | || | | ||||| |||||||||||||| || || || || || || ||||| Sbjct 73360 CTTTTCACCAGCGGATTTCTTGTCGAGACCGTACGCAATGGCAGCAGCGGTAGGCTCATT 73419 Query 7639 AATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 || || || |||||| |||| || | || | ||||| || || |||||||||| Sbjct 73420 GATGATTCGCAAGACA-TTCAAACCCGAGATCAAACCGGCATCCTTGGTTGCTTGTCGTT 73478 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 | || ||||| |||||||| || || || ||||| || ||| |||| | |||||| | Sbjct 73479 GAGAGTCGTTGAAGTAGGCGGGCACGGTAACGACGGCATCCTTGACGGGTTCACCGAGGT 73538 Query 7758 ACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTTC 7809 | | ||| || | ||| ||| ||| ||| ||||| ||||| |||||||| Sbjct 73539 ATGCTTCAGCAGTCTCTCGCATCTTTACCAAG-ACCATGGATGAGATCTCTTC 73590 >seq1 Length=477187 Score = 185 bits (204), Expect = 1e-41 Identities = 546/831 (66%), Gaps = 18/831 (2%) Strand=Plus/Plus Query 7012 ACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAAT 7071 ||| || |||| |||||| ||||| | || ||||| ||||| |||||||||||||| || Sbjct 239881 ACCGGTCAAGACGGCGGCCTGGACGGCGGCACCGTAGGCGACGGCCTCATCGGGGTTGAT 239940 Query 7072 CGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGAT 7131 | || |||| | | |||| ||| || || || | | ||||| || ||||| Sbjct 239941 GGACTTGTTCAACTGTCGTCCGTCAAAGTATTCAGAGACGAGCGACTGAATCTTGGGGAT 240000 Query 7132 TCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTC 7191 || || || |||||||| | || || || | || || | |||||| | ||| Sbjct 240001 ACGGGTGGAACCACCGACGAGGACAATGTCTTCGACCTTGGCGGCGGGGATCTTGGCGTC 240060 Query 7192 -TCGAAGTGTTTTTTCGACAGGTTCCA---TACATTTACGGAACAAGTCCATACACAGTT 7247 | ||| |||| |||| || || | | | || | | | | | | | Sbjct 240061 CTTCAAGACCTTTT-CGACGGGGTCAACGGTCGACTTGAAGGCGACGGCGTTGATC---T 240116 Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307 | || || || || ||||| ||| | |||| ||||| |||||| | || || || | Sbjct 240117 CTTCGAATCGGGCTCGGGTGATGTTGGCGGAGAAGTCAACACCGTCGAACAAGGAGTCGA 240176 Query 7308 TTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365 ||| | ||| || || || || ||||| || |||||||| || || ||||| || | Sbjct 240177 CTTCGACGGTGGTCTGGGTGACG--GAAGACAAGGTTCGCTTGGCTCGTTCACAGGCAGA 240234 Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425 ||| || || || || || || |||| | || || || ||| || || || || Sbjct 240235 TCGCAATCGTCGGAGAGCTCGGGGGTCTTCTGAGATGTCGAGCTTGGACTTTCGCTTGAA 240294 Query 7426 CTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTAT 7484 ||| | |||||| || || ||| | || || ||||||||||||||||| || | Sbjct 240295 CTCGGCCTTGAAGTGCTCCAACAAGT-TGTTGTCAAAGTCTTCACCACCCAAGTGGGTGT 240353 Query 7485 CCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAA 7544 | || ||||| || ||||| |||| ||| || | ||| || | |||||||| | Sbjct 240354 CACCGGCGGTGGCCTTGACGGTGAAGACACCGCCCTGGATGGACAAGAGGGAAACATCGA 240413 Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG--TTCTTATC 7602 | || ||||| |||| || || || | || || | || || ||| | || | || Sbjct 240414 AAGTTCCACCTCCCAAATCGAAGATCAAGACAATCTTCTCCTC--CTTGGACTTTTGGTC 240471 Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCC 7662 | |||||| ||||| || || || || || || ||||| || || ||| || || || Sbjct 240472 CAAACCGTAAGCGATGGCGGCGGCGGTGGGCTCGTTAATGATTCGGAGAACGTCCAAACC 240531 Query 7663 AGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 |||||| | | || || || || || ||| || || ||||| |||||||| || || Sbjct 240532 AGCAATGGCACCGGCGTCCTTGGTTGCCAATCGCTGAGAGTCGTTGAAGTAGGCGGGAAC 240591 Query 7723 CGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTT 7782 || ||||| || | | |||| |||| |||| | | || | ||| || ||||| || Sbjct 240592 GGTGACGACGGCCTTCTTGACGGTCTTGCCGATCTTGGCCTCGGAGATTTCCTTCATCTT 240651 Query 7783 GGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 ||| | ||||| | || || || | | | ||||| ||| | ||||| Sbjct 240652 GGTCAAGACCATGGCGGAGATTTCCTGGGGGGAGAACTGCTTCCTCTCACC 240702 Score = 98.7 bits (108), Expect = 1e-15 Identities = 121/165 (73%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 7978 CATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGC 8037 |||||| | |||||||| || || || ||||| | || ||| | | || || || Sbjct 240897 CATGGCCGACTGGTTCTTGGCGGCATCACCGATCAATCGCTCACCGT---CGGTGAAGGC 240953 Query 8038 GACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTT 8097 ||||||||| || || || | || || |||||||| || || || || || |||||||| Sbjct 240954 GACGTACGACGGCGTAGTCCTGTTTCCCTGGTCGTTGGCGATGATCTCAACTCGGTCGTT 241013 Query 8098 TTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACC 8142 |||||||| ||||| || || || || || || ||||| ||||| Sbjct 241014 TTGCCAGAGACCGACACATGAGTAGGTGGTACCCAAATCGATACC 241058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635126178740560