Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq20 109 4e-19 seq101 105 4e-18 >seq20 Length=67849 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| | |||||||||||| | || || ||||| ||||| ||||| ||| Sbjct 54301 CCGCCTCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 54242 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || ||||| | || |||| ||| || || || || || | ||| |||||||| | || Sbjct 54241 AGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGA 54182 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| || ||| ||||||| | || | || | ||| || Sbjct 54181 ATGCCCTCCTTGTCCTGGATTTTCGATTTGACGTTGTCAATGGTGTCCGAAGACTCGACT 54122 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || || || ||||| ||||| ||||| || |||||||||||| Sbjct 54121 TCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCATA 54074 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || || |||| |||| || |||||||||||||| || Sbjct 54038 TTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAA 53979 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || |||||||| | || | || |||||||| ||||| || ||| Sbjct 53978 AATCAAACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGCTCTTAACGTT 53919 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | | ||| || || | ||| || || ||||| || |||||||| || Sbjct 53918 GTCGATGGTATCGCTCGACTCGACTTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGAC 53859 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 53858 GAAGATCTGCATA 53846 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||| |||||||| || | ||| | ||| ||| ||||||||||| || ||||| Sbjct 53617 CCACCCCGCAACCTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAG 53558 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || |||| |||| || || || |||||||| || || | ||||||||| || | || Sbjct 53557 AGAGTTCGACCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGA 53498 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| |||||| ||||| || | ||||| || || ||| Sbjct 53497 ATTCCTTCCTTGTCCTGAATCTTGGACTTGAC--AT--TGTCGATTGTGTCGGAGGACTC 53442 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 || |||| || || || ||||| ||||| ||||| Sbjct 53441 GACTTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTT 53406 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| || | ||| || ||||||||||| || ||||| | |||| | || Sbjct 54515 CAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGACAAAGTTCGACCGTC 54456 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| ||| ||||| ||||| || | ||||||||||| |||| | ||||||||||| Sbjct 54455 CTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTC 54396 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| |||||| | || | || | || || || | ||| || || Sbjct 54395 CTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGACTTCAAGGGTGATCGT 54336 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || | ||||| || |||||||||||| Sbjct 54335 CTTTCCGGTCAAGGTCTTGACGAAGATCTGCATA 54302 >seq101 Length=212447 Score = 105 bits (116), Expect = 4e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | || |||||| |||||||| | || || ||||| ||||| ||||||||| Sbjct 117773 CCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAA 117832 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| |||| |||| || |||||||| ||||| || || ||||| ||||| || | || Sbjct 117833 AGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGA 117892 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | || | || || ||| || Sbjct 117893 ATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 117952 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAG 34960 |||| ||| ||||| || |||||||| Sbjct 117953 TCGAGGGTGATGGTCTTACCCGTGAG 117978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324630300302352