Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq20 93.3 3e-13 >seq20 Length=67849 Score = 93.3 bits (102), Expect = 3e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| |||||||| | ||||||| |||||||||||| |||||||| || || | || Sbjct 53573 AATGTTGTAATCCGAGAGAGTTCGACCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCG 53514 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 563390 |||||||||||| ||||||||||| || || ||||| || Sbjct 53513 TTGCTGATCAGGGGGAATTCCTTCCTTGTCCTGAATCTT 53475 Score = 86.0 bits (94), Expect = 5e-11 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || || | ||| | || ||| || ||| ||||| || | ||||||| Sbjct 54065 GAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTTCG 54006 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||||||| ||||||||||| ||||| | | ||||| ||||||||||||||||| Sbjct 54005 ACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATTCCTTC 53946 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 || || || || || || || || || ||||| | || | | ||| | | Sbjct 53945 CTTGTCCTGGATCTTGCTCTTAACGTTGTCGATGGTATC-GCTCGACTCGACTTCCAAGG 53887 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| || || || || ||||| || ||||| || |||||| Sbjct 53886 TAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCATA 53846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029251894318660