Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq20 87.8 1e-12 >seq20 Length=67849 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 101289 TATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCT 101348 || |||| || | | ||| || | || ||||| ||||| || ||||| ||||| |||| Sbjct 54778 TACTGTAGTCAGACAAAGTCCTACCGTCTTCCAACTGCTTTCCGGCAAAGATCAATCGCT 54719 Query 101349 GTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGT 101408 | || ||||| |||||||||||||| || ||||| || || ||| | || | || | Sbjct 54718 GCTGGTCGGGGGGAATGCCTTCTTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTAT 54659 Query 101409 CAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 | |||| || ||||| | |||| || || ||||| | ||| Sbjct 54658 CCGACGACTCGACTTCCAACGTGATAGTCTTTCCGGTCAGAGT 54616 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| | ||| | || ||||| | || ||||| || || || ||||| |||| Sbjct 54073 CCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGAC 54014 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||||| |||| || | || || || || || ||||||||||| || || || ||| Sbjct 54013 AGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGA 53954 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || || || | || | || || || || ||| Sbjct 53953 ATTCCTTCCTTGTCCTGGATCTTGCTCTTAACGTTGTCGATGGTATCGCTCGACTCGACT 53894 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | ||| || ||||| | ||| || || || |||||||| Sbjct 53893 TCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396274372077738