Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq20 109 4e-19 >seq20 Length=67849 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| || || ||| || ||||| |||||||| || | | ||||| Sbjct 54520 AGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGACAAAGTTCGA 54461 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| |||| || || || || | || | ||||||| Sbjct 54460 CCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGGGATGCCCTCC 54401 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | || || || | || || || | || Sbjct 54400 TTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGACTTCAAGGGTG 54341 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| ||||| || || || || |||||||| Sbjct 54340 ATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 48586 TATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCT 48645 || |||| ||||| | | | | | |||| ||||||||||| |||||||| |||| ||||| Sbjct 54778 TACTGTAGTCAGACAAAGTCCTACCGTCTTCCAACTGCTTTCCGGCAAAGATCAATCGCT 54719 Query 48646 GTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACT 48705 | || || | ||||| ||| || ||||| |||||| || ||| | | | | Sbjct 54718 GCTGGTCGGGGGGAATGCCTTCTTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTAT 54659 Query 48706 CTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGT 48748 | |||| ||| || |||| ||| || || ||||| |||| ||| Sbjct 54658 CCGACGACTCGACTTCCAACGTGATAGTCTTTCCGGTCAGAGT 54616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933728007382