Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq157 140 4e-27 seq412 136 5e-26 seq223 107 2e-17 seq501 104 3e-16 seq10 95.1 1e-13 >seq157 Length=196411 Score = 140 bits (154), Expect = 4e-27 Identities = 109/130 (84%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 1592171 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGC 1592230 || ||| | |||||||| ||||||||| | ||||| |||||| |||||||||| || ||| Sbjct 58132 TTCGAGATCATCCTCGCTGCCAACTACTTGGACATTAAGCCTTTGCTCGATCTCGGTTGC 58073 Query 1592231 AAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAAC 1592290 ||| |||| ||||||||||||||||||||| | |||||||||||||| ||| || ||| Sbjct 58072 AAGACTGTCGCCAACATGATCAAGGGCAAGACTCCCGAGGAGATCCGAAAGTTGTTCAAC 58013 Query 1592291 ATCAAGTACG 1592300 ||| || ||| Sbjct 58012 ATCCAGAACG 58003 >seq412 Length=151924 Score = 136 bits (150), Expect = 5e-26 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || || ||| | | ||||| || ||||||||||||||| |||| || Sbjct 145077 GCTTGGACAACTCTCCGGGAAGGATCAATCGACAGGCGGTCTGGATCTCTCGCGACGAGA 145018 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| || ||||| || |||| | ||||||| | |||| || || | | Sbjct 145017 TGGTGGATCGGTTGTTGTAGACGGCCAACTTGGATGCCTCGGCGGCGATTCGCTCAAAGA 144958 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| ||| |||||||||| || |||||| | |||||||||||| || |||||||| Sbjct 144957 TGTCGGAGACGAACGAGTTCAAGATCGACATGGCCTTGTTGGAGATACCAGTGTCGGGGT 144898 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTACGA 1254562 | ||||||||||| |||||||||||| | || |||||||| Sbjct 144897 GGACCTGCTTGAGGACCTTGTAGATGTAGGAAGAGTACGA 144858 >seq223 Length=304017 Score = 107 bits (118), Expect = 2e-17 Identities = 193/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTG---TCGTTAAAGACGCGGAGCATGGGCACGAGGCC 1630118 || ||| |||||||| || || || |||| ||| | || |||||||| |||| || Sbjct 175511 GCCCTGATCGACGTATCGAGCGGTAGCATCGT--AAG-CTCGAAGCATGGGGACGATACC 175455 Query 1630119 GTTGGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGC 1630178 ||| || | |||||||| || || | ||| | || ||| || | ||||| | Sbjct 175454 GTTCGAGTAACCGTTGGTACCGGCAATGTACGATCCCTTGGCTCGAATGTTGTGAATGTT 175395 Query 1630179 AAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGAT 1630238 || || || ||||| || | |||||| || | || || || | || |||||||| Sbjct 175394 CAATCCAATACCGCCCGCAGTCTTGGAAATCATGGCACAAGTCTTCAAGGTATCGTAGAT 175335 Query 1630239 GCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGC 1630298 ||||| ||||||||| |||||||| | || | |||||||| || || ||||| | Sbjct 175334 TCCCTCAATCGAGTCGTCCTTCATGGCGACCAAGAAGCACGAGGACAACTGGGGGTGGGG 175275 Query 1630299 CGTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAA 1630337 || ||||||||||| | ||||||| || |||||| Sbjct 175274 AGTACCGGCGTTGAACAAGGTGGGCGAGGCGTGGGTGAA 175236 >seq501 Length=137356 Score = 104 bits (114), Expect = 3e-16 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 868708 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 868767 ||| ||| |||||||||||||| || |||| ||||| || |||||| | ||| Sbjct 92718 CACACGCGACTCGAAAAAGTTGGCTTTACCCTGCAGCGAAATGTTCTCCATAAAGTCGAA 92777 Query 868768 CGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGAC 868827 |||||||| ||||| ||| ||| |||||| | |||||| ||||||||||| Sbjct 92778 CGGGTTGGTATCGTTGTACACCTTGTCGTTTCCGAGTGCGACGAGCAATCGGTCGGCGAC 92837 Query 868828 AAACTCG-ATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCG 868886 || ||| ||||| ||||||||||| |||||||||||||||||| |||| | Sbjct 92838 GAA-TCGAATGTATTGGCACATGAGCTTTTCGTTCATGCCGATGAGCGAACAGGGCAAGG 92896 Query 868887 ACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 ||| ||| || || |||| |||||||| || |||||| Sbjct 92897 CGTCGGTCAAGAATTCACATTCGAGGTCGACGGCTTCCTTGATGAT 92942 >seq10 Length=73900 Score = 95.1 bits (104), Expect = 1e-13 Identities = 231/350 (66%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 18121 GTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAG 18180 |||||| |||||||||||| || || || | || |||| || | | |||||||| Sbjct 51512 GTCGGCGCCATCATCGACGGTGTCCCCCCCGGATTGACACTCACCAACGAGGACATCCAA 51453 Query 18181 CCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCCC 18240 ||| | || || || ||||||||| ||| | |||| ||||| ||| Sbjct 51452 GTCCAGCTCTCACGACGTCGCCCGGGCCAGAGCGACATCACCACTCCGCGATCAGAGTAT 51393 Query 18241 GATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGC 18300 ||| ||| ||||| ||||| ||||| | ||| | |||||||| |||| ||||| Sbjct 51392 GATTACGTGGCGATCCAATCGGGAACGGAACATGGCGTGACGCTCGGGACGCCGATCGGC 51333 Query 18301 CTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCG 18360 | |||| ||| || ||| |||| ||||| |||| | | | | ||| Sbjct 51332 TTGGTTGTCCTGAACAAGGATCAGAGGCCGCATGACTACACCGAGACGGACTTCTTCCCG 51273 Query 18361 CGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGC 18420 |||| ||||| || | ||||||| | |||||||||||| |||||||||| || Sbjct 51272 AGGCCGAGTCACGCGGATTTCACCTACCTCGCCAAGTACGGCGTCAAGGCGTCCAGTGGT 51213 Query 18421 GGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGC 18470 ||||| || | || || | ||||| | | || ||||||||||| Sbjct 51212 GGAGGAAGGGCCTCGGCGAGGGAGACGATTGGAAGGGTTGCCGCCGGCGC 51163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107070758054378