Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq412 152 8e-31 seq157 113 7e-19 seq501 105 1e-16 >seq412 Length=151924 Score = 152 bits (168), Expect = 8e-31 Identities = 183/249 (73%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 1485480 GACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCG 1485539 ||| ||||||||||| || |||| ||||||| ||| || || ||| | | ||||| || Sbjct 145106 GACAGCCTTGGTACCTTCAGAGATGGCGTGCTTGGACAACTCTCCGGGAAGGATCAATCG 145047 Query 1485540 CACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCG 1485599 ||||||||||||||| || | ||| ||| || ||||| | |||| Sbjct 145046 ACAGGCGGTCTGGATCTCTCGCGACGAGATGGTGGATCGGTTGTTGTAGACGGCCAACTT 144987 Query 1485600 GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACAT 1485659 | ||||||| | |||| || || | |||||| ||| |||||||||| ||||||||| Sbjct 144986 GGATGCCTCGGCGGCGATTCGCTCAAAGATGTCGGAGACGAACGAGTTCAAGATCGACAT 144927 Query 1485660 CGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGA 1485719 | ||||||||||| || ||||||||| ||||||||||| |||||||| | |||| Sbjct 144926 GGCCTTGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGACCTTGTAGATGTAGGA 144867 Query 1485720 CGAGTACGA 1485728 |||||||| Sbjct 144866 AGAGTACGA 144858 >seq157 Length=196411 Score = 113 bits (124), Expect = 7e-19 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 2035632 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGC 2035691 || ||| | |||||||| ||||||||| | ||||| ||||| | |||||| | || ||| Sbjct 58132 TTCGAGATCATCCTCGCTGCCAACTACTTGGACATTAAGCCTTTGCTCGATCTCGGTTGC 58073 Query 2035692 AAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAAC 2035751 ||||| || |||||| | |||||||||||| | |||||||| ||||| ||| || ||| Sbjct 58072 AAGACTGTCGCCAACATGATCAAGGGCAAGACTCCCGAGGAGATCCGAAAGTTGTTCAAC 58013 Query 2035752 ATCAAGTACG 2035761 ||| || ||| Sbjct 58012 ATCCAGAACG 58003 >seq501 Length=137356 Score = 105 bits (116), Expect = 1e-16 Identities = 163/229 (71%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 793916 CACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAA 793975 ||| ||| |||||||||||||| || |||| ||||| || |||||| | ||| Sbjct 92718 CACACGCGACTCGAAAAAGTTGGCTTTACCCTGCAGCGAAATGTTCTCCATAAAGTCGAA 92777 Query 793976 CGGGTTGGC--CGTCAGGTAGTGCTTCTCGCACCCGAG--CGACGCAAGCAGGCGGTCGG 794031 |||||||| ||| ||| ||| ||| ||||| ||||| |||| ||||||| Sbjct 92778 CGGGTTGGTATCGTT--GTACACCTTGTCGTTTCCGAGTGCGACG--AGCAATCGGTCGG 92833 Query 794032 CGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCA 794091 |||||||| |||||| ||||||||||| |||||||||||||||||| ||||| Sbjct 92834 CGACGAATCGAATGTATTGGCACATGAGCTTTTCGTTCATGCCGATGAGCGAACAGGGCA 92893 Query 794092 GCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 | ||| | | || || |||| |||||||| || ||||||| Sbjct 92894 AGGCGTCGGTCAAGAATTCACATTCGAGGTCGACGGCTTCCTTGATGAT 92942 Score = 93.3 bits (102), Expect = 7e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 794582 CCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGA 794641 |||||||||||| |||||||||||| | ||||||||| ||||| |||||||||||||| | Sbjct 93362 CCGGGTCCTTGATGTAGGTGTCGATCAAGAGCGAGTACGTCTCGGAGTGGATGTTTTCCA 93421 Query 794642 TGGCGATCTGGAAGCCATAAAAGCAGTTG 794670 | ||| ||||| || || ||| | ||| Sbjct 93422 TCATGATTTGGAAACCGTAGAAGAACTTG 93450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916157683616126