Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq20 132 3e-26 seq101 107 1e-18 seq334 89.7 3e-13 >seq20 Length=67849 Score = 132 bits (146), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||| |||||||||||| ||||| | ||| |||||||||||||| || ||||| Sbjct 53617 CCACCCCGCAACCTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAG 53558 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| || |||||||||||||||||||||| ||||||||| || | || Sbjct 53557 AGAGTTCGACCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGA 53498 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | || |||||||| | || || ||||| || | ||||| || || ||| Sbjct 53497 ATTCCTTCCTTGTCCTGAATCTTGGACTTGAC--AT--TGTCGATTGTGTCGGAGGACTC 53442 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 ||| || | || || |||||||| |||||||||||| Sbjct 53441 GACTTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTT 53405 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||||||||| ||||| ||||| || || | || |||| Sbjct 53830 AGAACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGTGTTCGGCCATCT 53771 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||||||||||||||||| ||||||||| || | || | ||||| ||||| Sbjct 53770 TCGAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGGATACCCTCTTTGTCC 53711 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||||| || | ||| || ||| Sbjct 53710 TGAATCTTAGACTTGACGTTGTCGATAGTGTCCGAAGATTCGACCTCCAAGGTGATTGTC 53651 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | |||||| || ||||| ||||| Sbjct 53650 TTTCCGGTCAAGGTCTTGACGAAGATTTGCAT 53619 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || || | || | || |||| ||||| || ||||| Sbjct 54266 CTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAA 54207 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| ||| |||||||| | || | ||||||||||| | ||||| ||||||| Sbjct 54206 AATCAATCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGGATTTTCGATTTGACGTT 54147 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | |||||| || | || || |||||||| ||||| ||||| || Sbjct 54146 GTCAATGGTGTCCGAAGACTCGACTTCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGAC 54087 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 54086 GAAGATCTGCAT 54075 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| || ||||| | | || | || |||| |||||||| || || Sbjct 54494 CTCCTTCTGAATGTTGTAATCCGACAAAGTTCGACCGTCCTCCAACTGCTTTCCCGCAAA 54435 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| ||||||||||| |||| | ||||||||||| | || || |||||| Sbjct 54434 GATCAACCGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 54375 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | ||||| |||| ||| || |||||||| || | |||||| || Sbjct 54374 GTCAATAGTATCCGAAGATTCGACTTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGAC 54315 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 54314 GAAGATCTGCAT 54303 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| ||||| || || | || |||| || || || ||||||||||| Sbjct 54037 TCCTTCTGAATGTTGTAGTCGGACAGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAA 53978 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || |||||||| | || | || |||||||| | || || || ||| Sbjct 53977 ATCAAACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGCTCTTAACGTTG 53918 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | | |||||| || | ||| || |||||||| || || ||||| || Sbjct 53917 TCGATGGTATCGCTCGACTCGACTTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACG 53858 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 53857 AAGATCTGCAT 53847 >seq101 Length=212447 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | || ||||| ||||| ||| | || ||||||||| ||||| |||||||| Sbjct 117773 CCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAA 117832 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| || || || || ||||||||||| ||||| ||||| || | || Sbjct 117833 AGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGA 117892 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || |||||| | || | || || |||||| Sbjct 117893 ATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 117952 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGG 34957 || | ||| |||||||| ||||||||| Sbjct 117953 TCGAGGGTGATGGTCTTACCCGTGAGG 117979 >seq334 Length=295082 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | ||| | || ||||| ||| | || ||||||||| ||||| ||||| || Sbjct 55646 CCACCACGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAC 55705 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| || || ||||| ||||||||||||| ||| |||||||| | || Sbjct 55706 AGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGG 55765 Query 34871 ACCCCCTCCTTGTC 34884 | || |||||||| Sbjct 55766 ATACCTTCCTTGTC 55779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689489536246