Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq445 125 5e-23 seq6 120 2e-21 >seq445 Length=279476 Score = 125 bits (138), Expect = 5e-23 Identities = 361/547 (66%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 281933 AAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAAT 281992 || || ||||||||||| || | | || |||||||| || | ||| |||||| Sbjct 155331 AAGACCTTTTCAACGGGGTCCATGGTGGATCGGAACAAGTCCTGGCACAATTCCTCGAAT 155272 Query 281993 TTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAA 282050 |||| || ||| || | || || || || |||||||||| || || | ||| | Sbjct 155271 CGGGCTCGGGT--GAGCGAGGTGTAGAAGTCGATACCTTCGAACAGCGAGTCGATTTCGA 155214 Query 282051 TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTC 282110 ||| || || | | ||| || | | || || || |||||||| || || | | || Sbjct 155213 TCGAGGTCTGGGCGGCAGAGGACAAGGTTCGCTTTGCTCGTTCACAGGCGGTTCGCAATC 155154 Query 282111 TTCGTAAGGCTTTTGCTGATTGA-TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCA 282169 ||| | |||| || | | || |||| || | || | |||| |||||| || | | Sbjct 155153 GTCGGAGGGCTCGGGC-GTTGGAGCTCAAGTCCTTCTTGTTCTTTCGCTTGAATTCCTGA 155095 Query 282170 ACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGAC 282229 ||| | | || | || || ||||| |||||||| ||||| | || | || | Sbjct 155094 ACAAAGTGGTTGACCAATCGGTTGTCAAAGTCTTCACCACCCAAGTGGGTGTCACCGGCG 155035 Query 282230 GTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCA 282289 ||||| | |||| ||| | || ||||||| | ||| || | |||||| |||||| Sbjct 155034 GTAGCCTTGACTTCGAAGATACCCTCTTCAATGGTCAAGAGGGAAACATCGAAAGTTCCA 154975 Query 282290 CCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCAT 282347 || |||| ||| || || | || ||| |||| || || || || || | ||| | Sbjct 154974 CCTCCCAAATCGAAGATCAAGACGTTC--TTCTCGCCCTCGGATTTCTTGTCCAAACCGT 154917 Query 282348 ACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTC 282407 | |||| ||| || || || || || || || |||| ||| || || | ||| | || Sbjct 154916 AGGCAATAGCGGCGGCGGTAGGCTCGTTGATGATTCGCAAGACGTTCAAACCCGAGATCA 154857 Query 282408 TTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAA 282467 || ||||| || ||||| |||| || || ||||| || || || || || || | || Sbjct 154856 AACCGGCATCCTTGGTGGCCTGTCGCTGCGAGTCGTTGAAGTAGGCGGGGACGGTGACAA 154797 Query 282468 CGGCATC 282474 |||| || Sbjct 154796 CGGCGTC 154790 >seq6 Length=76207 Score = 120 bits (132), Expect = 2e-21 Identities = 358/543 (66%), Gaps = 11/543 (2%) Strand=Plus/Plus Query 281754 CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTT 281813 ||||| | || || || | |||||||| || || || |||||||| || || | || Sbjct 72746 CAAGA-TGGCGGCCTGGACGGCAGCACCGTACGCGACGGCTTCATCCGGGTTGATGCTTC 72804 Query 281814 CATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAG 281873 || ||| ||| ||||| || | |||| || | | | ||| ||||| || | Sbjct 72805 GGTTGGGTTCCCGACCGTTGAAGAAGTCGGAAACGAGCTTTTGGATCTTGGGAATTCGGG 72864 Query 281874 ATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATA 281933 || || || || | || || || | |||| ||| || || | || ||||| | Sbjct 72865 TGGAACCACCGACGAGGACGATCTCGTTCACCGTTGACTTGTCAATCTTGGAATCACGCA 72924 Query 281934 AAACTTTTTCAAC-GGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAAT 281992 | || ||||| || |||| || | | | || ||||||||| ||| | |||||||||| Sbjct 72925 AGACCTTTTCGACCGGGTCCATGGTCTG-TCGGAACAAGTCTTGACACAATTCTTCGAAT 72983 Query 281993 TTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAA 282050 ||||| || || |||| | || || || || ||||| ||||| ||||| | ||||| Sbjct 72984 CGAGCTCGGGT--GATTGACGTGTAAAAGTCGATACCTTCAAACAAGGAATCGATTTCAA 73041 Query 282051 TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTC 282110 |||| || |||| | ||||| | | || || || ||||||||||| || | | || Sbjct 73042 TCGTCGTCTGAGCGGCGGAAGACAAGGTTCGCTTGGCTCGTTCACATGCCGTTCGCAATC 73101 Query 282111 TTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTC 282168 ||| | ||| || |||| | ||| | || | |||| ||| || |||| Sbjct 73102 GTCGGAGCGCTCGGGC--ATTGGAGGAGATATCCTTCTTGTTCTTTCGCTTAAATTCTTG 73159 Query 282169 AACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGA 282228 ||| | | || || || || ||||| |||||||| ||||| | ||| | || | Sbjct 73160 GACAAAGTGGTTGACGAGTCGGTTGTCAAAGTCTTCACCACCCAAGTGAGTGTCACCCGC 73219 Query 282229 CGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCC 282288 || || | |||| ||||| || ||||| | | ||| || | |||||| ||||| Sbjct 73220 GGTCGCCTTGACTTCGAAAATACCTTCTTCGATGGTCAAGAGGGAAACATCGAATGTTCC 73279 Query 282289 ACC 282291 ||| Sbjct 73280 ACC 73282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740589454124484