Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq20 147 4e-30 seq101 105 1e-17 >seq20 Length=67849 Score = 147 bits (162), Expect = 4e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | ||| || || || |||| ||| ||||| ||||| || || || || | Sbjct 54075 TACCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGG 54016 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||| ||| ||||| || |||||||| || || || | | || || || |||| Sbjct 54015 ACAGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAG 53956 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760 | ||||||||||| || || ||| ||||| || || || || || ||||| | | || Sbjct 53955 GAATTCCTTCCTTGTCCTGGATC-TTGCTCTTAACGTTGTCGATGGTATCGCTCGACTCG 53897 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || |||||||| || |||| ||||| || || |||||||| Sbjct 53896 ACTTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| | ||| || | ||| ||||| ||||| ||||| || || ||||| | Sbjct 53619 TACCACCCCGCAACCTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCCG 53560 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||| ||| ||||| ||||| ||||| || ||||| | || ||| ||||| || | Sbjct 53559 AGAGAGTTCGACCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGG 53500 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || |||||||| | || ||||| || || || || | || | Sbjct 53499 GAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATTGTGTCGGAGGACTCGA 53440 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 |||| | ||| |||||||| || || | |||||| Sbjct 53439 CTTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTT 53405 Score = 100 bits (110), Expect = 6e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 || ||||| | | | ||||||||||| | || ||||| |||||||| | || || || Sbjct 54773 TAGTCAGACAAAGTCCTACCGTCTTCCAACTGCTTTCCGGCAAAGATCAATCGCTGCTGG 54714 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 || || || || ||||| || || |||||||| | || ||||| ||||||||||| Sbjct 54713 TCGGGGGGAATGCCTTCTTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTATCCGAC 54654 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCT 82794 | || |||||||| || || ||||| || |||| |||| Sbjct 54653 GACTCGACTTCCAACGTGATAGTCTTTCCGGTCAGAGTCT 54614 >seq101 Length=212447 Score = 105 bits (116), Expect = 1e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| || | || || ||||||| |||||| || ||||| || || || || || Sbjct 117772 ACCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGA 117831 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || ||| ||| ||||| || ||||| || || ||||| |||| || ||||| ||||| Sbjct 117832 AAGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGG 117891 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 ||||||||||| || || ||||| | || || || || || || || Sbjct 117892 AATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTC 117939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981816708562726