Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq223 127 2e-24 seq20 100 3e-16 seq101 91.5 1e-13 seq35 82.4 7e-11 >seq223 Length=304017 Score = 127 bits (140), Expect = 2e-24 Identities = 293/436 (67%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 148263 ACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGA-TACACGTTGCTCGTAAACGGTTC 148321 || ||||| || || |||||||| || || || ||| || | |||||| ||| ||||||| Sbjct 176714 ACGACCTGGAAATCACCGGCGAGTACACGTCG-AGAGTAGATGTTGCTGGTATACGGTTC 176656 Query 148322 AAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAG 148381 || | ||||| ||||| ||||| | |||| ||| || |||||| || || || Sbjct 176655 GAAGCATTCGTTCCAACCCAAGATCTGAGACGTCGATGCGGTTGGCATGGGGGCAACTAG 176596 Query 148382 CAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAG 148441 |||||||| |||||||| || || ||| ||||| | ||||||||||||||| Sbjct 176595 GAGCGAGTTTCGCAAACCAGTCTTGGCGATCTTGGCCTTCAAGGTCGCCCAGTCCCAGAG 176536 Query 148442 CGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCC 148501 | ||||| || | | ||| | |||||| |||| |||| | || || || ||| Sbjct 176535 AGAGGACGGGGTAATGCCCCAGAGGTCGTATTGCAACTTGCCTTGACTGGCAGGCGAGCC 176476 Query 148502 CTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCC 148561 ||||| | ||| || || | | | |||| |||| | || ||||| ||| | Sbjct 176475 TTCGTAAGTCTGGTAAGGACCTTCAACTTCTGCCATTTCGGAAGAAGCTTCGAGTGCGGC 176416 Query 148562 GTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG---CTTTCGTA 148618 || ||| || || ||| || ||| |||||| | || | |||| | ||| | Sbjct 176415 GTGGTAGATGGTTTCGAAGATCTGCACGTTGAG--TTGTCG-AGCCTCGGGACCGTCGAA 176359 Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678 | ||| |||| | || || | |||||||| || || || || | |||| ||| || Sbjct 176358 AGCCATTCGCAACGCCATGAAGGTATCGGCAAGACCTTGAACTCCGAGACCAACGGGACG 176299 Query 148679 GTGTTTAATGTTGGAG 148694 |||| ||||| ||| Sbjct 176298 GTGTCGCATGTTCGAG 176283 >seq20 Length=67849 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| || ||||| ||| || || ||| | || || || Sbjct 54052 AAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGACCA-TCTTCAAG 53994 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| |||| | ||||||||||| ||||| || ||||||||||| ||| Sbjct 53993 CTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGAT 53934 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | || ||| | | ||| || || | ||| | || || || Sbjct 53933 CTTGCTCTTAACGTTGTCGATGGTATCGCTCGACTCGACTTCCAAGGTAATCGTCTTTCC 53874 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||| || ||||| |||||||| Sbjct 53873 GGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| | ||| ||| || | ||||||||| Sbjct 54271 GTCGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGTCCGTCTTCCAACTGCTTGCCA 54212 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | ||||||||||| || || ||||| |||||||| ||| || ||| Sbjct 54211 GCGAAAATCAATCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGGATTTTCGATTTG 54152 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | | ||| || |||| |||| || || || || || || Sbjct 54151 ACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGAGTGATAGTCTTTCCAGTGAGTGTC 54092 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 54091 TTGACGAAGATCTGCAT 54075 >seq101 Length=212447 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | || ||| | || |||||||| ||||| Sbjct 117803 GTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGACCA-TCTTCGAGCTGTTTGCC 117861 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| |||||||| || ||||| || ||||||||||| |||||| ||| Sbjct 117862 GGCGAAGATGAGTCGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGACTT 117921 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 || | || | ||||| | || ||| || |||| ||||| ||| || || || || Sbjct 117922 GACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAG 117978 >seq35 Length=226341 Score = 82.4 bits (90), Expect = 7e-11 Identities = 100/132 (76%), Gaps = 6/132 (5%) Strand=Plus/Minus Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535 || |||||||| ||| |||| || |||| | |||||||| ||||||||||| ||| Sbjct 176309 GGTTTCCACGTCCACCAGTTCGGTGACAACTCGAACGGCTGTACCTCCGCCGGTCCCCAC 176250 Query 116536 TTCAACCCCACCGG--CCAGGACCACGGCGCGCCCAAC-GCCGCCGTTCGTCACGTCGGT 116592 ||||||||||| || ||| |||||| | || ||| |||| || | ||||||||| Sbjct 176249 TTCAACCCCACTGGTACCAC--CCACGGTGA-CCGAACTGCCGAGGTCAGGCACGTCGGT 176193 Query 116593 GACCTGGGCAAC 116604 ||| |||| ||| Sbjct 176192 GACTTGGGTAAC 176181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483415760338160