Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq20 105 4e-18 >seq20 Length=67849 Score = 105 bits (116), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||| | ||| | |||||||| | ||| || || || |||||||| ||||| Sbjct 54074 ACCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGA 54015 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | ||||||||||| ||||||||||||||||| || | || Sbjct 54014 CAGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGG 53955 Query 33642 CACACCTTCTTTGT-CGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | ||||| |||| | | | || || || ||| | ||| | ||| ||||| || || Sbjct 53954 AATTCCTTCCTTGTCCTGGATCTTGCTCTT--AACGTTGTCGATGGTATCGCTCGACTCG 53897 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | || ||||| || || || | || || || |||||||||||| Sbjct 53896 ACTTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCATA 53846 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||| ||| || || ||||| || | ||| ||| || || |||||||| ||||| Sbjct 54302 ACCGCCTCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGA 54243 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| ||||| || || || || |||||||| |||||||| || | || Sbjct 54242 AAGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGG 54183 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| |||||| ||| | | | |||| |||||| || || | Sbjct 54182 AATGCCCTCCTTGTCCTGGATTTTCGATTTGA-CGTTGTCAATGGTGTCCGAAGACTCGA 54124 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 54123 CTTCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCATA 54074 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || || || |||||||| || || ||| || || ||||||||||| || Sbjct 54530 ACCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGA 54471 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || |||| ||||| || ||||| ||||| ||||| || ||||| || |||| Sbjct 54470 CAAAGTTCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGG 54411 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| || | | || | ||| | || || ||||| | Sbjct 54410 GATGCCCTCCTTGTCCTGAATCTT-GGACTTGACGTTGTCAATAGTATCCGAAGATTCGA 54352 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| |||||||| || || || || || || || |||||||||||| Sbjct 54351 CTTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCATA 54302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700658929280