Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq20 120 7e-22 seq101 87.8 4e-12 seq334 84.2 5e-11 >seq20 Length=67849 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 206181 TTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA 206240 ||| || || ||||| ||||| ||||||||| | ||||| || || |||||| |||| Sbjct 53402 TTGAAAGACCCTCACCGGAAAGACGATCACTCTCGAAGTCGAGTCCTCCGACACAATCGA 53461 Query 206241 ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTAT 206300 || ||| |||||||| || || ||||||||| || || ||| || | || Sbjct 53462 CAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAGCAACGATTGAT 53521 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 ||||||||||||||| | |||||||| | ||| | | ||||||||| | ||||| || Sbjct 53522 CTTCGCCGGAAAGCAACTTGAAGATGGTCGAACTCTCTCGGATTACAACATTCAGAAGGA 53581 Query 206361 GTCTACTCTTCACCTTGTTTTGAG 206384 || ||||| ||||| || |||| Sbjct 53582 ATCCACTCTCCACCTCGTCCTGAG 53605 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| |||||||| | ||||| ||| ||| || Sbjct 54306 CAGATCTTCGTCAAGACCTTGACCGGAAAGACGATCACCCTTGAAGTCGAATCTTCGGAT 54365 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||| || || || || || ||| ||| ||| Sbjct 54366 ACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAA 54425 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || |||||||||||||| || || | |||||| | ||||||||| | Sbjct 54426 CGGTTGATCTTTGCGGGAAAGCAGTTGGAGGACGGTCGAACTTTGTCGGATTACAACATT 54485 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| |||||||| || || | || ||| |||| ||| Sbjct 54486 CAGAAGGAGTCTACACTCCATTTGGTCTTGCGACTGCGA 54524 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || ||||| ||||| || ||| ||| ||||| |||| || ||| Sbjct 53643 ACCGGAAAGACAATCACCTTGGAGGTCGAATCTTCGGACACTATCGACAACGTCAAGTCT 53702 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 |||||||| || ||||| || || || || ||| || | ||||||||||||||| Sbjct 53703 AAGATTCAGGACAAAGAGGGTATCCCCCCTGATCAGCAACGATTGATCTTCGCCGGAAAG 53762 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | |||||||| | || | |||| |||||| ||||||| |||||||| | ||| Sbjct 53763 CAACTCGAAGATGGCCGAACACTTTCCGACTACAACATCCAGAAGGAGTCTACCTTGCAC 53822 Query 206374 CTTGTTTTGAGACTTCGA 206391 | ||| | |||| ||| Sbjct 53823 TTGGTTCTCCGACTCCGA 53840 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| ||||| || |||||| | ||||| || ||| ||| Sbjct 54078 CAGATCTTCGTCAAGACACTCACTGGAAAGACTATCACTCTCGAAGTCGAGTCTTCGGAC 54137 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||| | ||| || || || || || || ||| || ||| || Sbjct 54138 ACCATTGACAACGTCAAATCGAAA-ATCCAGGACAAGGAGGGCATTCCACCTGACCAGCA 54196 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | || ||||| || |||||||||||||| ||| | || | |||| |||||| | Sbjct 54197 GCGATTGATTTTCGCTGGCAAGCAGTTGGAAGACGGACGAACGCTTTCCGACTACAACAT 54256 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||| ||||| ||| | ||| | |||||| || | ||| Sbjct 54257 CCAGAAGGAGTCGACTTTGCACTTGGTTTTGCGATTGCGA 54296 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 206188 ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTA 206247 || || || ||||| || ||||| |||||||| || || || || | || || Sbjct 54616 ACTCTGACCGGAAAGACTATCACGTTGGAAGTCGAGTCGTCGGATACGATTGACAATGTC 54675 Query 206248 AAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCC 206307 ||| |||||||| || |||||||| ||| || ||| || || | ||||| ||| Sbjct 54676 AAGTCGAAGATTCAGGACAAAGAAGGCATTCCCCCCGACCAGCAGCGATTGATCTTTGCC 54735 Query 206308 GGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACA 206347 ||||||||||||||||| || ||||||||| | || |||| Sbjct 54736 GGAAAGCAGTTGGAAGACGGTAGGACTTTGTCTGACTACA 54775 >seq101 Length=212447 Score = 87.8 bits (96), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 ||||| || || || ||||| | || || || || ||||| |||| || ||| Sbjct 117978 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 117919 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 ||||| || || || ||||||||| || || || |||| ||||||||||| Sbjct 117918 TCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAGCGACTCATCTTCGCCGGC 117859 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 || ||| | |||||||| | || | | || |||||| ||||||| ||||||||| | Sbjct 117858 AAACAGCTCGAAGATGGTCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCTACTTTG 117799 Query 206371 CACCTTGTTTTGAGACTTCGA 206391 ||| | || ||||| || ||| Sbjct 117798 CACTTGGTCTTGAGGCTGCGA 117778 >seq334 Length=295082 Score = 84.2 bits (92), Expect = 5e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 |||||||||| || ||||| || || ||| || || | ||||||||||| |||| Sbjct 55787 AGATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGC 55728 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACC 206374 || | |||||||| | || || |||| |||||| ||||||| ||||| ||| | ||| Sbjct 55727 AGCTCGAAGATGGCCGAACCCTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACT 55668 Query 206375 TTGTTTTGAGA 206385 | || ||| || Sbjct 55667 TGGTCTTGCGA 55657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181808171506114