Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq412 140 5e-27 seq223 107 3e-17 seq501 95.1 2e-13 >seq412 Length=151924 Score = 140 bits (154), Expect = 5e-27 Identities = 180/247 (73%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| |||| ||||||||||| ||||||||||| |||||| || | | | Sbjct 144858 TCGTACTCTTCCTACATCTACAAGGTCCTCAAGCAGGTCCACCCCGACACTGGT-----A 144912 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||||||| ||||||||||| |||||||||| ||| |||||| | || || ||| Sbjct 144913 TC-TCCAACAAGGCCATGTCGATCTTGAACTCGTTCGTCTCCGACATCTTTGAGCGAATC 144971 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 | | ||||||| |||| || |||||| || ||| ||| |||| ||| Sbjct 144972 GCCGCCGAGGCATCCAAGTTGGCCGTCTACAACAACCGATCCACCATCTCGTCGCGAGAG 145031 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 |||||||||||| || ||||| | | ||| || || ||| ||||||| |||| || Sbjct 145032 ATCCAGACCGCCTGTCGATTGATCCTTCCCGGAGAGTTGTCCAAGCACGCCATCTCTGAA 145091 Query 725136 GGCACCA 725142 || |||| Sbjct 145092 GGTACCA 145098 >seq223 Length=304017 Score = 107 bits (118), Expect = 3e-17 Identities = 199/292 (68%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| ||| | |||||| || ||||||| | || || ||||| || || | Sbjct 175220 CATGTCCGAGCGATACTTCACCCACGCCTCGCCCACCTTGTTCAACGCCGGTACTCCCCA 175279 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 ||| ||| || |||||||| || | | |||||||| ||| ||||| ||||| ||||| Sbjct 175280 CCCCCAGTTGTCCTCGTGCTTCTTGGTCGCCATGAAGGACGACTCGATTGAGGGAATCTA 175339 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 || || | ||| || || | || |||||| | || ||||| || || || | Sbjct 175340 CGATACCTTGAAGACTTGTGCCATGATTTCCAAGACTGCGGGCGGTATTGGATTGAACAT 175399 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | || ||| ||| | ||| | || || |||||||| | || ||||| | Sbjct 175400 TCACAACATTCGAGCCAAGGGATCGTACATTGCCGGTACCAACGGTTACTCGAACGGTAT 175459 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 || ||||||||||| | || | | || || || |||||||| ||| || Sbjct 175460 CGTCCCCATGCTTCGAGCTTACGATGCTACCGCTCGATACGTCGATCAGGGC 175511 >seq501 Length=137356 Score = 95.1 bits (104), Expect = 2e-13 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 1455988 TTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTG 1456047 || || ||||| ||||| ||| || |||||||||||||| || || ||||||||| || Sbjct 93446 TTCTTCTACGGTTTCCAAATCATGATGGAAAACATCCACTCCGAGACGTACTCGCTCTTG 93387 Query 1456048 ATCGACACCTACGTCAAGGACCCGG 1456072 |||||||||||| |||||||||||| Sbjct 93386 ATCGACACCTACATCAAGGACCCGG 93362 Score = 89.7 bits (98), Expect = 7e-12 Identities = 121/163 (74%), Gaps = 7/163 (4%) Strand=Plus/Minus Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 |||||||||||||||||| | |||||||||||| |||||| ||| ||||||||||| Sbjct 92884 CGCTCATCGGCATGAACGAAAA-GCTCATGTGCCAATACATTCGATTC-GTCGCCGACCG 92827 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGG--CCAACCCGTTCCCATG 1456698 |||||| || ||||| || | ||| ||| ||| ||||||||||| | Sbjct 92826 ATTGCTCGTCGCACTCGGAAACG-ACAAGGTGTACA--ACGATACCAACCCGTTCGACTT 92770 Query 1456699 GATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||| || ||||| |||| || |||||||||||||| Sbjct 92769 TATGGAGAACATTTCGCTGCAGGGTAAAGCCAACTTTTTCGAG 92727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177730759167108