Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq20 165 2e-35 seq6 152 2e-31 seq101 111 5e-19 seq334 86.0 2e-11 >seq20 Length=67849 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || || || || || || || ||||| || || || ||||| || | Sbjct 53625 TTTGCATACCACCCCGCAACCTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGT 53566 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | ||||| |||||||||||||| ||||| || ||||| | |||||||||| Sbjct 53565 AATCCGAGAGAGTTCGACCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGAT 53506 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||||||||| || |||||||| || | || ||||| || || | || || | Sbjct 53505 CAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATTGTGTCGGAGG 53446 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTT 140723 || ||||| || || | ||||||||||| || || ||| Sbjct 53445 ACTCGACTTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTTT 53405 Score = 147 bits (162), Expect = 7e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | || | || | ||| || |||||||| || ||||| || ||||| Sbjct 54533 CATACCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATC 54474 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || || ||||| || || || | || ||||| |||||||| | |||||||| ||||| Sbjct 54473 CGACAAAGTTCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGG 54414 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | || || || ||||| | ||| || | ||| Sbjct 54413 CGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTC 54354 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| || | ||||||||||| | || || || || |||||||| Sbjct 54353 GACTTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | || ||||| | || | |||||||| || || || || || || Sbjct 53849 CATACCGCCTCGGAGTCGGAGAACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTC 53790 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | |||||| |||||||| ||||| ||||| || ||||| | |||||||||||||| Sbjct 53789 GGAAAGTGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGG 53730 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || ||||| |||||||| |||| || || || || || | || || | ||| Sbjct 53729 GGGGATACCCTCTTTGTCCTGAATCTTAGACTTGACGTTGTCGATAGTGTCCGAAGATTC 53670 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || | |||||||||||| | || || || || || ||||| Sbjct 53669 GACCTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATTTGCAT 53619 Score = 132 bits (146), Expect = 1e-25 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | | || || | ||| | ||| || || || ||||| || || || Sbjct 54077 CATACCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTC 54018 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||||||||| |||||||| || || || | ||| ||||| ||||| Sbjct 54017 GGACAGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGG 53958 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTA-CATTATCAATCGAATCAGATGGTT 140685 |||||||||||| || ||||| || || ||| ||| | || || || | ||| | | Sbjct 53957 AGGAATTCCTTCCTTGTCCTGGATCTT-GCTCTTAACGTTGTCGATGGTATCGCTCGACT 53899 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| | |||| ||||||||||| || || || || || |||||||| Sbjct 53898 CGACTTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 100 bits (110), Expect = 9e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621 || ||||| || || | || ||||| | || ||||| |||||||| | || ||||| Sbjct 54773 TAGTCAGACAAAGTCCTACCGTCTTCCAACTGCTTTCCGGCAAAGATCAATCGCTGCTGG 54714 Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681 || || ||||| |||||||| |||||||| || | || ||||| ||||||| ||| || Sbjct 54713 TCGGGGGGAATGCCTTCTTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTATCCGAC 54654 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 | || ||||| | || | ||||||||||| || || Sbjct 54653 GACTCGACTTCCAACGTGATAGTCTTTCCGGTCAGAGT 54616 >seq6 Length=76207 Score = 152 bits (168), Expect = 2e-31 Identities = 558/866 (64%), Gaps = 12/866 (1%) Strand=Plus/Plus Query 182919 ACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGT 182978 || || || ||||| || | ||||| || || | || || ||||| || ||||||||| Sbjct 72423 ACGTTCAAGATACCGTTGGCGTCAATGTCGAACGTAACCTCGATCTGAGGGACACCTCGT 72482 Query 182979 GGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCTT 183038 ||| || ||||| || | || |||| ||| | || || || |||| Sbjct 72483 GGCGCGGGAGGAATACCGGACAAGTCGAATTTACCGAGCAAGTTGCAGTCCTTGGTTCGC 72542 Query 183039 GCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAA 183098 || | || |||||| | ||||| || || | ||||| || ||| || || || Sbjct 72543 GCACGTTCACCTTCAAAGACTTGGATCAACACACCGGGCTGGTTGTCAGCGTAGGTGGAG 72602 Query 183099 AAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCGCG-GAACAATTACAGTCATTAC 183157 || | || || || | || | || | |||||| || ||| ||||| || Sbjct 72603 AAGATTTCAGACTTCTTGGTCGGGACCGTGGTGTTTCGCTTGATCAACGGG-GTCATGAC 72661 Query 183158 TTCTCTGGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCTGA 183217 ||| ||| || || | || | || || ||||| || || || || || || ||| Sbjct 72662 ACCTCCGGCCGTCTCGATACCCATCGACAAGGGTGCAACGTCGAGCAACAACAAGTCTTG 72721 Query 183218 TGTTTTATCTGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAAC 183277 || || || | | | | || || || || || || || ||||| || || || Sbjct 72722 AGTCTTGGACGAGGTGTCACCGGTCAAGATGGCGGCCTGGACGGCAGCACCGTACGCGAC 72781 Query 183278 AGCTTCATCTGGGTTAATTGAACGAGATAATTCTTTGCCATTAAAAAATTCTGAAAGCAT 183337 |||||||| ||||| || || ||| || || || || || |||| | Sbjct 72782 GGCTTCATCCGGGTTGATGCTTCGGTTGGGTTCCCGACCGTTGAAGAAGTCGGAAACGAG 72841 Query 183338 TTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACTAC----TTCATCGATAT 183393 | ||| || || ||||||| || ||||||||||| | || | |||| || | Sbjct 72842 CTTTTGGATCTTGGGAATTCGGGTGGAACCACCGACGAGGACGATCTCGTTCACCGTTG- 72900 Query 183394 TACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCCATAGTTTTTCTAA 183453 |||| | ||| | ||||| || || ||||| || |||||||| || | || | Sbjct 72901 -ACTTGTC--AATCTTGGAATCACGCAAGACCTTTTCGACCGGGTCCATGGTCTGTCGGA 72957 Query 183454 ATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGaaaaaaaGTCAATAC 183513 | || ||| ||| || ||||| |||| |||| || | || | ||||||| |||| Sbjct 72958 ACAAGTCTTGACACAATTCTTCGAATCGAGCTCGGGTGATTGACGTGTAAAAGTCGATAC 73017 Query 183514 CATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGATAATGTTCTTTTAG 183573 | | | | |||||||| |||||||||| || || | | || || || |||| || | Sbjct 73018 CTTCAAACAAGGAATCGATTTCAATCGTCGTCTGAGCGGCGGAAGACAAGGTTCGCTTGG 73077 Query 183574 CTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCTTGTT 183633 ||||||||||||| |||| | ||| || | | || | ||| | ||||| | | Sbjct 73078 CTCGTTCACATGCCGTTCGCAATCGTCGGAGCGCTCGGGCATTGGAGGAGATATCCTTCT 73137 Query 183634 TATGTTTTCTTTTAAATTCAGTAATAAAAT-GTTGAAGTAATCTTGTATCAAAATCTTCA 183692 | | |||| |||||||| | ||| | ||||| | | || | ||||| |||||| Sbjct 73138 TGTTCTTTCGCTTAAATTCTTGGACAAAGTGGTTGACG-AGTCGGTTGTCAAAGTCTTCA 73196 Query 183693 CCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTT 183752 ||||| || || || || || || || || || ||||| || || || ||||| || | Sbjct 73197 CCACCCAAGTGAGTGTCACCCGCGGTCGCCTTGACTTCGAAAATACCTTCTTCGATGGTC 73256 Query 183753 AAAATTGATACATCAAATGTACCACC 183778 || | || ||||| ||||| ||||| Sbjct 73257 AAGAGGGAAACATCGAATGTTCCACC 73282 Score = 123 bits (136), Expect = 8e-23 Identities = 548/863 (63%), Gaps = 6/863 (1%) Strand=Plus/Minus Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||| || || ||||| || || | || | ||||| || ||||| ||||| || || Sbjct 73282 GGTGGAACATTCGATGTTTCCCTCTTGACCATCGAAGAAGGTATTTTCGAAGTCAAGGCG 73223 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 || || ||||| || || | ||||| ||||| ||||| || || ||||| || ||| Sbjct 73222 ACCGCGGGTGACACTCACTTGGGTGGTGAAGACTTTGACAACCGACTCGTCAACCACTTT 73163 Query 349910 GTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGT 349969 || ||||||||||||| | || | ||||| ||| | |||| | || Sbjct 73162 GTCCAAGAATTTAAGCGAAAGAACAAGAAGGATATCTCCTCCAATGCCCGAGCGCTCCGA 73103 Query 349970 CGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCT 350029 || | |||| || |||||||| || ||||| |||| || || | | || || | Sbjct 73102 CGATTGCGAACGGCATGTGAACGAGCCAAGCGAACCTTGTCTTCCGCCGCTCAGACGACG 73043 Query 350030 ATTGAAATTGATTCTCTTG-CTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 |||||||| ||||| |||| ||| || | || || | | || || || || ||||| Sbjct 73042 ATTGAAATCGATTC-CTTGTTTGAAGGTATCGACTTTTACACGTCAATCACCCGAGCTCG 72984 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATT 350148 || |||||||| ||| || | || || || ||||| || || ||||| || || Sbjct 72983 ATTCGAAGAATTGTGTCAAGACTTGTTCCGACAGACCATGGACCCGGTCGAAAAGGTCTT 72924 Query 350149 AAAAGATGCAAAAATGTCCAAAAATCA--GATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 ||| | || | | | || ||| | | | || | || | || |||||||| Sbjct 72923 GCGTGATTCCAAGA--TTGACAAGTCAACGGTGAACGAGATCGTCCTCGTCGGTGGTTCC 72866 Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCT 350266 || || ||||| || | ||| || | | || || || || || || ||||| Sbjct 72865 ACCCGAATTCCCAAGATCCAAAAGCTCGTTTCCGACTTCTTCAACGGTCGGGAACCCAAC 72806 Query 350267 AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTA 350326 || || || || |||||||| || || || |||||||| || ||||| | || || Sbjct 72805 CGAAGCATCAACCCGGATGAAGCCGTCGCGTACGGTGCTGCCGTCCAGGCCGCCATCTTG 72746 Query 350327 TCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCG 350386 | || | | || || | | | || | || | || || || | || | ||| Sbjct 72745 ACCGGTGACACCTCGTCCAAGACTCAAGACTTGTTGTTGCTCGACGTTGCACCCTTGTCG 72686 Query 350387 CTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTA 350446 | || | || || | || | || ||||| | || |||| | || || Sbjct 72685 ATGGGTATCGAGACGGCCGGAGGTGTCATGACCCCGTTGATCAAGCGAAACACCACGGTC 72626 Query 350447 CCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATT 350506 || || || ||||| ||| || || || | || || || ||||| | || || Sbjct 72625 CCGACCAAGAAGTCTGAAATCTTCTCCACCTACGCTGACAACCAGCCCGGTGTGTTGATC 72566 Query 350507 CAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACC 350566 ||||| ||||||||||||||||| || || || || || || || |||| | Sbjct 72565 CAAGTCTTTGAAGGTGAACGTGCGCGAACCAAGGACTGCAACTTGCTCGGTAAATTCGAC 72506 Query 350567 CTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATT 350626 | | ||||| || ||| |||| || |||||||| || || | ||||| ||| Sbjct 72505 TTGTCCGGTATTCCTCCCGCGCCACGAGGTGTCCCTCAGATCGAGGTTACGTTCGACATT 72446 Query 350627 GATTCAAATGGTATTTTAAATGT 350649 || | || ||||| || || || Sbjct 72445 GACGCCAACGGTATCTTGAACGT 72423 Score = 100 bits (110), Expect = 9e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 |||||||| || ||||| ||||| || || || ||| || | |||||||||||| | Sbjct 73593 CCCGAAGAGATCTCATCCATGGTCTTGGTAAAGATGCGAGAGACTGCTGAAGCATACCTC 73534 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||||| | || | ||||| || |||| || || ||||| || || || | || || Sbjct 73533 GGTGAACCCGTCAAGGATGCCGTCGTTACCGTGCCCGCCTACTTCAACGACTCTCAACGA 73474 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 ||||| || ||||| || || |||| || ||||| | |||| || ||||| Sbjct 73473 CAAGCAACCAAGGATGCCGGTTTGATCTCGGGTTTGAATGTCTTGCGAATCATCAATGAG 73414 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 || || ||||| || ||||| || || || || || Sbjct 73413 CCTACCGCTGCTGCCATTGCGTACGGTCTCGACAA 73379 >seq101 Length=212447 Score = 111 bits (122), Expect = 5e-19 Identities = 140/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||| |||| || | ||||||||| || || || || || || || | ||||| |||||| Sbjct 117789 AGACCAAG-TGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGACCATCT 117847 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || ||||| || || ||||| || || ||||||||||||||||||||||| || ||| Sbjct 117848 TCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGAATTCCTTCCTTGTCC 117907 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || | || || || || || | || || | || || || || || | ||| Sbjct 117908 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 117967 Query 140706 TTTCCGGTTAG 140716 || || || || Sbjct 117968 TTACCCGTGAG 117978 >seq334 Length=295082 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATC-TTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||||| |||| ||| |||| || | ||| ||||| || || || || || || Sbjct 55643 ATACCACCACGCAATCGCAAGACCAAG-TGCAAAGTCGACTCCTTCTGGATGTTGTAGTC 55701 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| |||||||| || || || || || ||||| | || ||||| ||||| Sbjct 55702 GGACAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGG 55761 Query 140627 AGGAATTCCTTCTTTATCCTGAAT 140650 || || ||||| || || ||||| Sbjct 55762 GGGGATACCTTCCTTGTCTTGAAT 55785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515238208559702