Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq223 149 7e-31 >seq223 Length=304017 Score = 149 bits (164), Expect = 7e-31 Identities = 254/366 (69%), Gaps = 2/366 (1%) Strand=Plus/Minus Query 79522 CGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGC 79581 |||||| |||||||| | |||||| || || || | | || |||| |||||||| Sbjct 175522 CGCTTGTTACCGCCCTGATCGACGTATCGAGCGGTAGCATCGTAAGCTCGAAGCATGGGG 175463 Query 79582 ACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC 79641 ||||| |||| | | ||||| || ||| || | || | || |||||||| Sbjct 175462 ACGATACCGTTCGAGTAACCGTTGGTACCGGCAATGTACGATCCCTTGGCTCGAATGTT- 175404 Query 79642 GAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGT 79700 | | | || | ||| || || || | |||||| || || || ||| | || Sbjct 175403 GTGAATGTTCAATCCAATACCGCCCGCAGTCTTGGAAATCATGGCACAAGTCTTCAAGGT 175344 Query 79701 CTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTG 79760 |||||||| ||||| ||||||||||||||||| ||||||| |||||| |||| ||| Sbjct 175343 ATCGTAGATTCCCTCAATCGAGTCGTCCTTCATGGCGACCAAGAAGCACGAGGACAACTG 175284 Query 79761 TGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCT 79820 |||| | |||||||||||||| | ||| |||| ||||| |||||| | | | Sbjct 175283 GGGGTGGGGAGTACCGGCGTTGAACAAGGTGGGCGAGGCGTGGGTGAAGTATCGCTCGGA 175224 Query 79821 CATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGAC 79880 ||| || | ||||||||| |||| | || ||| ||||||||| ||||| ||||| Sbjct 175223 CATGAGGTTGTACGTCTCGATGACTTTCTCGACGTCTCGGCCGTGGATACCGACAGCGAC 175164 Query 79881 GCGCAT 79886 ||||| Sbjct 175163 TCGCAT 175158 Score = 123 bits (136), Expect = 3e-23 Identities = 492/763 (64%), Gaps = 35/763 (5%) Strand=Plus/Plus Query 20078 AAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTC 20137 || ||||| ||||| ||||| || | | |||| || || || || ||||| ||| Sbjct 176281 AACTCGAACATGCGACACCGTCCCGTTGGTCTCGGAGTTCAAGGTCTTGCCGATACCTTC 176340 Query 20138 ATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTC 20197 ||| | | | | | ||||||| |||| |||| || | |||||| | |||||| Sbjct 176341 ATGGCGTTGCGAATGGCTTTCGACGGTCCCGAGGCTCGACAACTCAACGTGCAGATCTTC 176400 Query 20198 GAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCG 20257 || || | |||||||| || ||| | || | |||| | || ||| || || || Sbjct 176401 GAAACCATCTACCACGCCGCACTCGAAGCTTCTTCCGAAATGGCAGAAGTTGAAGGTCCT 176460 Query 20258 TACGAGACGTTCAAGGGGTCGCCCGC--GTCCGAGGGTATCCTCCAGCCGGACATGTGGG 20315 ||| |||| | | | || ||||| || ||| | || | | || ||| | |||| Sbjct 176461 TACCAGACTTACGAAGGCTCGCCTGCCAGTC--AAGGCAAGTTGCAATACGACCTCTGGG 176518 Query 20316 GCGTCACTGAGAA-TGAGTTTTGGA----GCGCCCTC-AAGGTTGAGATC---AAGACCC 20366 || | || | | | | ||| ||| ||| |||| ||||| ||||| Sbjct 176519 GCATTACCCCGTCCTCTCTCTGGGACTGGGCGACCTTGAAGGCCAAGATCGCCAAGACT- 176577 Query 20367 ACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCA 20426 || | || |||||| | || || || |||||||| ||||| ||||| | |||||| Sbjct 176578 --GGTTTGCGAAACTCGCTCCTAGTTGCCCCCATGCCAACCGCATCGACGTCTCAGATCT 176635 Query 20427 TGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGG 20486 |||| ||||| ||||| ||||| || | ||||||||||| || ||| ||| | Sbjct 176636 TGGGTTGGAACGAATGCTTCGAACCGTATACCAGCAACATCTACTCTCGACGTGTACTCG 176695 Query 20487 CCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTC----CGCGACTTGCAGAAGATCGAT 20542 ||||||| ||| || ||| | || | |||| || |||||| || | | | Sbjct 176696 CCGGTGATTTC--CA-GGTCGTCT-GCCCTTGGTTGTTGCGTGACTTGGTCAACCTTGGT 176751 Query 20543 ATGTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGGCATTG 20602 | ||| | | || ||||| ||| || ||| ||| | |||| || Sbjct 176752 CTTTGGGACGACGAGATGAAGAACCGAATCATC---GCCCACGGTGGT-TCCATTCAAAA 176807 Query 20603 GAT-------ATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACA 20655 || ||||| | | || |||| || |||| |||||| ||||||||| || Sbjct 176808 CATCCCCAACATCCCTGCGGAACTAAAGGGTATCTACAAGACCGTTTGGGAAATCAGCCA 176867 Query 20656 GAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCT 20715 ||| |||||||||| | || || || || || |||| ||||| ||||| || ||||| Sbjct 176868 GAAAGGCATCATCGATCTCGCTGCGGACCGAGGAGCCTTTATCGATCAGTCGCAATCGCT 176927 Query 20716 CAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTG 20775 ||| | |||| || || | ||| |||| | || ||||| | |||||||| Sbjct 176928 CAACATTCACATGACCAACCCTTCCATGGGTCAGCTCACGTCTATGCACTTCTACGGCTG 176987 Query 20776 GCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACCCGA 20818 | | ||||| | ||||| ||||||||||| |||| || ||| Sbjct 176988 GAAGAAGGGATTGAAGACCGGCATGTACTACTTGCGAACTCGA 177030 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||||||||| ||||| ||||| ||| ||| || | |||| |||||| ||| || Sbjct 175158 ATGCGAGTCGCTGTCGGTATCCACGGCCGAGACGTCGAGAAAGTCATCGAGACGTACAAC 175217 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 || ||| | || | |||||| ||||| |||| ||| | |||||||||||||| | Sbjct 175218 CTCATGTCCGAGCGATACTTCACCCACGCCTCGCCCACCTTGTTCAACGCCGGTACTCCC 175277 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 |||| ||| |||| || ||| | || || |||||||| ||| |||||||| ||| Sbjct 175278 CACCCCCAGTTGTCCTCGTGCTTCTTGGTCGCCATGAAGGACGACTCGATTGAGGGAATC 175337 Query 19298 TACGAGAC 19305 ||||| || Sbjct 175338 TACGATAC 175345 Score = 102 bits (112), Expect = 9e-17 Identities = 230/343 (67%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 19498 CATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCA 19557 |||||||||||| || ||||||||||| ||| | |||||| |||| |||| |||||| Sbjct 175591 CATCTACCTCGAACCTTGGCACGCGGATGTCTTCGATTTCATCGACTTGCGAAAGAACCA 175650 Query 19558 GGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATT 19617 || | || || | || ||| ||| | ||| || | |||||||||||| | || Sbjct 175651 CGGCAAGGAAGAAGTCCGAGCTCGAGACTTGTTCTACGCGCTCTGGATTCCGGACATGTT 175710 Query 19618 CATGGAGAAG-GTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTG 19676 || | || | || ||| || | ||| ||| ||||||| || |||| ||||| | Sbjct 175711 TAT-GCGACGTGTAGAGTCCGATGGAGACTGGGCGTTGATGTGTCCCAACGAGTGCCCCG 175769 Query 19677 GCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGG 19736 | | ||||||| ||||| |||| ||| | || ||||| | || | | | | Sbjct 175770 GATTGTCCGACGTTCACGGCAAGGCTTTCGACGAACTGTACGAAAAGTATGAACGTGAAG 175829 Query 19737 GCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGG 19796 || ||||| ||||| ||| ||| | | | ||| | | || | | ||| | Sbjct 175830 GCAAGTTCAGAAAGGTCGTCAAGGCACAAAAGCTTTGGTTCGCCATCTTGGATGCCCAAG 175889 Query 19797 TCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAA 19839 |||| ||||| ||| | |||| ||||||||| |||||||| Sbjct 175890 TCGAAACCGGTGGACCATTCATGCTCTACAAGGATGCCGCGAA 175932 Score = 102 bits (112), Expect = 9e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 78187 CGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATA 78246 || |||||||| ||||||||||| ||||| | ||||||||||| ||||| | ||||||| Sbjct 177029 CGAGTTCGCAAGTAGTACATGCCGGTCTTCAATCCCTTCTTCCAGCCGTAGAAGTGCATA 176970 Query 78247 CTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCG 78306 || |||| ||| ||||| |||| ||||||||||| || ||||| ||| Sbjct 176969 GACGTGAGCTGACCCATGGAAGGGTTGGTCATGTGAATGTTGAGCGATTGCGACTGATCG 176910 Query 78307 ATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTT-TGCGGAATCTCCCAGAT 78365 || | || || ||||| || || | ||||||| | |||| || || ||||| | Sbjct 176909 ATAAAGGCTCCTCGGTCCGCAGCGAGATCGATGA-TGCCTTTCTGGCTGATTTCCCAAAC 176851 Query 78366 GGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGT 78400 |||| ||| || |||| || || | |||||| Sbjct 176850 GGTCTTGTAGATACCCTTTAGTTCCGCAGGGATGT 176816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548519081628960