Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq52 132 5e-26 seq223 118 1e-21 >seq52 Length=53616 Score = 132 bits (146), Expect = 5e-26 Identities = 309/458 (67%), Gaps = 11/458 (2%) Strand=Plus/Plus Query 117149 AACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAG 117208 ||||| ||||| || || ||||| || | ||||||| | || || || || | |||| Sbjct 9162 AACCC-GTTCCAATGCCGTCTGCGCCGTCAATCAGAACGAGAGGAACCACCGGCAGGTAG 9220 Query 117209 AACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTC 117268 | || || || | || | |||| || | ||||||||| | || || ||| | Sbjct 9221 TATTCCGGTTCGATTCCCATATCGTCTTCGATCTGGTACTTGAGGATCGGATCGTCGTTG 9280 Query 117269 GGATCGAATATGTTCTTG-GTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGC 117327 || | ||| | || || | ||| | | | | || ||||||||||||| || || Sbjct 9281 GGGTGGAACA-GTGCTCGAGTCATTCGCGGGATGTTCGTAAAAATGTAACGAGCACTGGC 9339 Query 117328 AGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAG 117387 |||||| || ||||| || | ||| ||||||||||| || |||| | | ||||| | Sbjct 9340 AGCATCTTTACCACCTGCGATACGAGTACCGAATTGACCGTTCGGTGCGAGAAGGTTGAT 9399 Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTG--GAGGCTCGCC 117445 ||||||| ||| ||||||||||| || | || ||||| | || ||| | Sbjct 9400 GTTGTTGCTGCCAACAAAGTTTTGCGCGAGACCAACGATCGT--CATGACGAGCGACTGT 9457 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505 |||||||| || || ||||||| || | ||||| || |||| || || ||||| || Sbjct 9458 TCACCATGATGGTAAGCCGTCTTTTCGGAAACGTAACCGGCCAATTGTGCGACCTTGATT 9517 Query 117506 TC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563 || |||| || || ||||| ||| | | | || || || |||| || |||| Sbjct 9518 TCTTTGAC--AAGCTTTCGCTTGAAGCAACCGAACAAGACTTTCCGTTGACCCGGTTTCA 9575 Query 117564 GACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCC 117601 | |||||||| ||| ||| ||||| || || ||||| Sbjct 9576 GGCCATCCGCAACGGAAGGAATCGATCGAATGTTGTCC 9613 >seq223 Length=304017 Score = 118 bits (130), Expect = 1e-21 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| || | | ||||| ||||| | ||||||||||| ||| | | ||| Sbjct 175143 CCTCAGCATATGATTATGCGAGTCGCTGTCGGTATCCACGGCCGAGACGTCGAGAAAGTC 175202 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||||||| || | ||| | | ||||| || |||||| |||| ||| ||||| Sbjct 175203 ATCGAGACGTACAACCTCATGTCCGAGCGATACTTCACCCACGCCTCGCCCACCTTGTTC 175262 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| ||||| ||||| ||| |||| |||||| |||| || |||||||| ||| Sbjct 175263 AACGCCGGTACTCCCCACCCCCAGTTGTCCTCGTGCTTCTTGGTCGCCATGAAGGACGAC 175322 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 ||||| || || |||||||| || | ||| |||||| || |||||| |||| Sbjct 175323 TCGATTGAGGGAATCTACGATACCTTGAAGACTTGTGCCATGATTTCCAAGACTGCGGGC 175382 Query 53420 GGTATCGG 53427 ||||| || Sbjct 175383 GGTATTGG 175390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210295273200