Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq20 149 7e-31 seq101 120 3e-22 seq223 113 5e-20 seq334 91.5 2e-13 seq52 84.2 2e-11 >seq20 Length=67849 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| ||||| ||||| | || || ||||| | Sbjct 53847 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACGATTACCTTGGAAGTCGAGTCGAGC 53906 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| || || ||||||||||| ||||||||||| |||||| Sbjct 53907 GATACCATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 53966 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || || || || || || |||| ||| || || | ||||| || Sbjct 53967 CAGCGTTTGATTTTCGCCGGAAAACAGCTTGAAGATGGTCGAACTCTGTCCGACTACAAC 54026 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| ||| | ||| | ||| | ||||| || || || Sbjct 54027 ATTCAGAAGGAATCGACTTTGCATTTGGTCCTTCGTCTCCGAGGAGG 54073 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || |||||||| ||||| || || ||||| Sbjct 54075 ATGCAGATCTTCGTCAAGACACTCACTGGAAAGACTATCACTCTCGAAGTCGAGTCTTCG 54134 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || | ||||| |||||||||||||| ||||| || |||||| Sbjct 54135 GACACCATTGACAACGTCAAATCGAAAATCCAGGACAAGGAGGGCATTCCACCTGACCAG 54194 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | ||||| ||||| ||||| | || || | || || || | ||||| || Sbjct 54195 CAGCGATTGATTTTCGCTGGCAAGCAGTTGGAAGACGGACGAACGCTTTCCGACTACAAC 54254 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| ||||| || ||| | || | || ||||| Sbjct 54255 ATCCAGAAGGAGTCGACTTTGCACTTGGTTTTGCG 54289 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| || || ||||| || || || Sbjct 54303 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACGATCACCCTTGAAGTCGAATCTTCG 54362 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||| | || ||||||||||||||||| || || || |||||| Sbjct 54363 GATACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 54422 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || ||||| || ||||| | ||||| | ||| || | | || || || Sbjct 54423 CAACGGTTGATCTTTGCGGGAAAGCAGTTGGAGGACGGTCGAACTTTGTCGGATTACAAC 54482 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || ||| | |||||||| || || ||||| Sbjct 54483 ATTCAGAAGGAGTCTACACTCCATTTGGTCTTGCGACTGCGAGGTGG 54529 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27421 AAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAAT 27480 ||||| || ||||| ||||| || ||||| || || ||||| || | || | ||| Sbjct 53406 AAGACCCTCACCGGAAAGACGATCACTCTCGAAGTCGAGTCCTCCGACACAATCGACAAT 53465 Query 27481 TTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTT 27540 | ||| | || |||||||||||||| |||||||| || || ||||| || | || || Sbjct 53466 GTCAAGTCCAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAGCAACGATTGATCTTC 53525 Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 || || |||||||| || |||| ||| || || | || || || | || ||||||||| Sbjct 53526 GCCGGAAAGCAACTTGAAGATGGTCGAACTCTCTCGGATTACAACATTCAGAAGGAATCC 53585 Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || ||| || | | || ||||| Sbjct 53586 ACTCTCCACCTCGTCCTGAGGTTGCGGGGTGG 53617 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | ||||| ||||| || || | ||||| || || Sbjct 53619 ATGCAAATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAGGTCGAATCTTCG 53678 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| |||| ||||||||||| ||||| || || || || ||| Sbjct 53679 GACACTATCGACAACGTCAAGTCTAAGATTCAGGACAAAGAGGGTATCCCCCCTGATCAG 53738 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || || || ||||||||||| |||| || || || | ||||| || Sbjct 53739 CAACGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACACTTTCCGACTACAAC 53798 Query 27586 GTCCAAAAGGAATCCAC 27602 |||| ||||| || || Sbjct 53799 ATCCAGAAGGAGTCTAC 53815 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 27422 AGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATT 27481 |||| || ||||| |||||||| || | || || ||||| |||| |||| ||| Sbjct 54614 AGACTCTGACCGGAAAGACTATCACGTTGGAAGTCGAGTCGTCGGATACGATTGACAATG 54673 Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 | ||| | || ||||||||||| || || ||||| || ||||||||||| | || |||| Sbjct 54674 TCAAGTCGAAGATTCAGGACAAAGAAGGCATTCCCCCCGACCAGCAGCGATTGATCTTTG 54733 Query 27542 CTGGTAAGCA 27551 | || ||||| Sbjct 54734 CCGGAAAGCA 54743 >seq101 Length=212447 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || || || ||||| ||||| || | ||| | || | ||| Sbjct 117978 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 117919 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || ||||||||||| ||||||||||| || |||||||| || || || || || Sbjct 117918 TCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAGCGACTCATCTTCGCCGGC 117859 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || || ||||| |||| ||| ||||| | ||||| || |||| ||||| || ||| | Sbjct 117858 AAACAGCTCGAAGATGGTCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCTACTTTG 117799 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | |||||| | || || ||||| Sbjct 117798 CACTTGGTCTTGAGGCTGCGAGGTGG 117773 >seq223 Length=304017 Score = 113 bits (124), Expect = 5e-20 Identities = 229/337 (68%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081 || ||||||||| |||| | || |||||| ||||| || | | | ||||||| | Sbjct 175926 GCATCCTTGTAGAGCATGAATGGTCCACCGGTTTCGACTTGGGCATCCAAGATGGCGAAC 175867 Query 81082 CAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAA 81141 |||| || | |||||||| ||||| | ||| |||||||| ||||||| |||| Sbjct 175866 CAAAGCTTTTGTGCCTTGACGACCTTTCTGAACTTGCCTTCACGTTCATACTTTTCGTAC 175807 Query 81142 GCTTCGTCGAA---CTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCAC 81198 ||||||||| |||| ||||||| || | | | ||||||||||| || ||| Sbjct 175806 AGTTCGTCGAAAGCCTTG---CCGTGAACGTCGGACAATCCGGGGCACTCGTTGGGACAC 175750 Query 81199 ATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGG 81258 |||| |||||| ||| ||||||| ||| || ||| || |||||||| Sbjct 175749 ATCAACGCCCAGTCTCCATCGGACTCTACACGTCGCATAAACATGTCCGGAATCCAGAGC 175690 Query 81259 GCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGA 81316 ||| ||||| ||| || ||| || | || || | || ||||| ||||| |||| Sbjct 175689 GCGTAGAACAAGTCTCG--AGCTCGGACTTCTTCCTTGCCGTGGTTCTTTCGCAAGTCGA 175632 Query 81317 GAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATA 81353 || || | || ||||| ||||| || || || || Sbjct 175631 TGAAATCGAAGACATCCGCGTGCCAAGGTTCGAGGTA 175595 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 || || |||| ||||||||||| ||||| | ||||||||||||||||| | ||||||| Sbjct 177029 CGAGTTCGCAAGTAGTACATGCCGGTCTTCAATCCCTTCTTCCAGCCGTAGAAGTGCATA 176970 Query 80095 GAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAG 80154 || |||||| | | | ||||| |||| ||||| || || || |||||| | Sbjct 176969 GACGTGAGCTGACCCATGGAAGGGTTGGTCATGTGAATGTTGAGCGATTGCGACTGATCG 176910 Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTT-TGTGGAATTTCCCATAC 80213 || || || || || || || || | || || | || |||| || |||||||| || Sbjct 176909 ATAAAGGCTCCTCGGTCCGCAGCGAGATCGATGA-TGCCTTTCTGGCTGATTTCCCAAAC 176851 Query 80214 TGT 80216 || Sbjct 176850 GGT 176848 >seq334 Length=295082 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| |||||||| || || || || ||||||||||| | || || || || ||||| Sbjct 55785 ATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 55726 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 ||||| |||| || ||||| | ||||| || |||| ||||| || ||| | || | Sbjct 55725 CTCGAAGATGGCCGAACCCTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTG 55666 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 |||||||| | || ||||| Sbjct 55665 GTCTTGCGATTGCGTGGTGG 55646 >seq52 Length=53616 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 31165 AAGAAAACAGATGGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGACGACGCC 31224 ||||| |||||||| | ||| || |||||| |||| ||| ||| ||||| |||||| Sbjct 10425 AAGAAGACAGATGGCGCTAAACGATCACGAATTTCGGGTATTGTGAAACTCGAAGACGCC 10366 Query 31225 AACTGGGCCGGTACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGTGACTCG 31284 || || ||| | ||| | | || |||||||||||| | ||||| || || || Sbjct 10365 AATAATGCTGGTGGAAAAAAGGCAAAGGACTGCACGCTTATTCTCACCGAAGGAGATTCC 10306 Query 31285 GCAAAGGCGCTTGCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGGGTGTTT 31344 || || ||||| || | ||||| || || || || || | | |||||| || Sbjct 10305 GCCAAAGCGCTCGCCGTCTCTGGCCTGTCCGTCGTTGGACGTGACAACTACGGGGTCTTC 10246 Query 31345 CCGCTCCGAGGCAAGC 31360 |||||||| || |||| Sbjct 10245 CCGCTCCGTGGAAAGC 10230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304454514080