Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq829 107 2e-18 >seq829 Length=85973 Score = 107 bits (118), Expect = 2e-18 Identities = 234/345 (68%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30173 |||| || ||||| |||| || |||||| | |||||| || |||||| |||| || Sbjct 14250 CTTTCGGATTCCACGCGCTCATGATGATCCTCCTGTCCGTCGGATTGTTCTTGATCTTGT 14309 Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTG 30232 | | | | ||||||||||| || |||| || || || | || ||| || Sbjct 14310 CAATCACCTGCGCAAGCTGATCCACTCCTCGTCCCGTATAATCGTCCTCGCACGTCT-TG 14368 Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 |||||||| ||||||||||||||||||||||| ||||| || |||| || || || | Sbjct 14369 TACTCTGCCCCGAAATGCCTCCACTGGAACCCATACACAGGGCCCAAATCACCTTCCCTC 14428 Query 30293 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30352 | || | || || |||||| | | || ||||| || || | ||||||| | Sbjct 14429 CGATGTCCTAATCCAACCTTGTCGAGGTACTCCCTGGATCCATTTCCCGCCCAGATGTGG 14488 Query 30353 ACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30412 | |||| || | ||| || || ||| || || | ||||||||| || || ||| Sbjct 14489 ATGTCCTTTTCGGCGAGGAGCTTTCCGTCTGTCGATCCACGGACGAACCAGAGTAGTTCC 14548 Query 30413 TCCACGACGGCCTTCCA-AAAGACCCTCTTGGTCGTGAGGAGGGG 30456 || || || |||| | ||||| | || || |||||||| || Sbjct 14549 TCGACTAC-GCCTCGGAGGAAGACTCGTTTTGTGGTGAGGAGCGG 14592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406306270108728