Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq20 102 5e-17 >seq20 Length=67849 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || ||||| ||||||||||| || |||||| |||||||| ||||| || Sbjct 54529 CCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGAC 54470 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| |||| || | || || || ||||| || || || || ||||| ||||| Sbjct 54469 AAAGTTCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGGG 54410 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| || | || ||| | ||| || || || || Sbjct 54409 ATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGAC 54351 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| ||||| || ||||| || || || || || |||||||| Sbjct 54350 TTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||||| | ||||| ||||| || | ||| |||||| || ||||| || || ||| Sbjct 54301 CCGCCTCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 54242 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||| | || || || || || || || ||||| ||||| || || Sbjct 54241 AGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGA 54182 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| ||| | ||| ||| | ||| ||||| ||| || Sbjct 54181 ATGCCCTCCTTGTCCTGGAT-TTTCGATTTGACGTTGTCAATGGTGTCCGAAGACTCGAC 54123 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || || || | || || || || |||||||| Sbjct 54122 TTCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCAT 54075 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| ||||| |||||||| ||||| || || ||||| | ||||||||||| Sbjct 53593 TGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAGAGAGTTCGACCATCTTCAAGTTGC 53534 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 || ||||| || || || || || || || || || | ||| |||||||| Sbjct 53533 TTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGAATTCCTTCCTTGTC 53484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726400970322