Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq20 167 2e-36 seq334 109 5e-19 seq101 102 7e-17 >seq20 Length=67849 Score = 167 bits (184), Expect = 2e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| |||| ||||| ||||| || | || Sbjct 54075 ATGCAGATCTTCGTCAAGACACTCACTGGAAAGACTATCACTCTCGAAGTCGAGTCTTCG 54134 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| ||||| || ||||| || ||||| ||||| || || Sbjct 54135 GACACCATTGACAACGTCAAATCGAAAATCCAGGACAAGGAGGGCATTCCACCTGACCAG 54194 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 ||||| || || | ||| ||||| || ||||||||| | ||| || ||||||| ||||| Sbjct 54195 CAGCGATTGATTTTCGCTGGCAAGCAGTTGGAAGACGGA-CGAACGCTTTCCGACTACAA 54253 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| || || ||||||||||| ||||| || || || Sbjct 54254 CATCCAGAAGGAGTCGACTTTGCACTTGGTTTTGCGATTGCGAGGCGGTAT 54304 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||| ||| | || || |||||||| ||| | || Sbjct 54303 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACGATCACCCTTGAAGTCGAATCTTCG 54362 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || ||||| ||||| || ||||| || || || || Sbjct 54363 GATACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 54422 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || || | || || || || ||||| ||| || ||| | || || |||||||| Sbjct 54423 CAACGGTTGATCTTTGCGGGAAAGCAGTTGGAGGACGGT-CGAACTTTGTCGGATTACAA 54481 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || | |||||||| ||||| |||| ||||| || Sbjct 54482 CATTCAGAAGGAGTCTACACTCCATTTGGTCTTGCGACTGCGAGGTGGTAT 54532 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||| ||| | ||||| | ||||| || || | Sbjct 53847 ATGCAGATCTTCGTCAAGACTCTGACCGGAAAGACGATTACCTTGGAAGTCGAGTCGAGC 53906 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || ||||| ||||| || || || || || Sbjct 53907 GATACCATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 53966 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| ||||| | ||||| || || | ||||| |||||| Sbjct 53967 CAGCGTTTGATTTTCGCCGGAAAACAGCTTGAAGATGGTCGAACTCTGTCCGACTACAAC 54026 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| ||||| || |||||||| | ||| | || || || || Sbjct 54027 ATTCAGAAGGAATCGACTTTGCATTTGGTCCTTCGTCTCCGAGGAGGTAT 54076 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27002 AAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGAT 27061 ||| || || ||||| ||| | || ||||| ||||| || | |||||| | || || | Sbjct 53405 AAAGACCCTCACCGGAAAGACGATCACTCTCGAAGTCGAGTCCTCCGACACAATCGACAA 53464 Query 27062 GGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATA 27121 ||||| || ||||| ||||| ||||| || || || ||||| || || || || | Sbjct 53465 TGTCAAGTCCAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAGCAACGATTGATCTT 53524 Query 27122 CGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTC 27181 |||||| || ||| | ||||| || || | || |||||||||||||| ||||| || Sbjct 53525 CGCCGGAAAGCAACTTGAAGATGGTCGAACTCTCTCGGATTACAACATTCAGAAGGAATC 53584 Query 27182 GACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | || | || || | ||||||||||| || Sbjct 53585 CACTCTCCACCTCGTCCTGAGGTTGCGGGGTGGTAT 53620 Score = 104 bits (114), Expect = 2e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 27006 ACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTC 27065 ||||||||||| ||| |||| || | ||||| || |||| || ||||||| | ||| Sbjct 54616 ACTCTGACCGGAAAGACTATCACGTTGGAAGTCGAGTCGTCGGATACGATTGACAATGTC 54675 Query 27066 AAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCC 27125 || || ||||| |||||||||||||| || ||||| || ||||| || || | ||| Sbjct 54676 AAGTCGAAGATTCAGGACAAAGAAGGCATTCCCCCCGACCAGCAGCGATTGATCTTTGCC 54735 Query 27126 GGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 || || || ||||||||| || ||| | || || |||| Sbjct 54736 GGAAAGCAGTTGGAAGACGGTAGGACTTTGTCTGACTACA 54775 >seq334 Length=295082 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 ||||||||||| ||||| || || || || || ||||| || || | ||||||||| || Sbjct 55785 ATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 55726 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 | ||||| | ||| | ||||| |||||||| || ||||||||||| || || ||| Sbjct 55725 CTCGAAGATGGCCGAACCCTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTG 55666 Query 27195 GTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| ||||| ||||| || Sbjct 55665 GTCTTGCGATTGCGTGGTGGTAT 55643 >seq101 Length=212447 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || || ||| | || || || || || || | || ||| | || || | ||||| Sbjct 117978 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 117919 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || || ||||| ||||| || || || ||||| ||||| | || | ||||||| Sbjct 117918 TCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAGCGACTCATCTTCGCCGGC 117859 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 ||||| | ||||| || ||| |||| || |||||||| || |||||||| || || Sbjct 117858 AAACAGCTCGAAGATGGTCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCTACTTTG 117799 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| ||| | |||| ||||| Sbjct 117798 CACTTGGTCTTGAGGCTGCGAGGTGG 117773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913865975680