Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq829 100 3e-16 >seq829 Length=85973 Score = 100 bits (110), Expect = 3e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 ||||| |||||||||| ||| | |||||| ||||| || || ||| | |||| Sbjct 14252 TTCGGATTCCACGCGCTCATGATGATCCTCCTGTCCGTCGGATTGTTCTTGATCTTGTCA 14311 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATAC 6901 ||||| | | ||||| ||| |||| |||||| ||| || | |||| | | ||| Sbjct 14312 ATCACCTGCGCAAGCTGATCCACTCCTCGTCCCGTATAATCGTCCTCGCACGTCTTGTAC 14371 Query 6902 TCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGA 6961 || ||||| || || |||||||||||||| || || |||||||| || || ||| |||| Sbjct 14372 TCTGCCCCGAAATGCCTCCACTGGAACCCATACACAGGGCCCAAATCACCTTCCCTCCGA 14431 Score = 100 bits (110), Expect = 3e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34384 TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGA 34443 |||| ||| || || |||||||| || || |||||||||||||| || || ||||| || Sbjct 14431 TCGGAGGGAAGGTGATTTGGGCCCTGTGTATGGGTTCCAGTGGAGGCATTTCGGGGCAGA 14372 Query 34444 GTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGAT 34503 ||| | | |||| | || ||| |||||| |||| ||| ||||| | | ||||| Sbjct 14371 GTACAAGACGTGCGAGGACGATTATACGGGACGAGGAGTGGATCAGCTTGCGCAGGTGAT 14312 Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 |||| | ||| || || ||||| |||||| | ||| |||||||||| ||||| Sbjct 14311 TGACAAGATCAAGAACAATCCGACGGACAGGAGGATCATCATGAGCGCGTGGAATCCGAA 14252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448257726864480