Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq20 98.7 7e-16 seq334 84.2 2e-11 >seq20 Length=67849 Score = 98.7 bits (108), Expect = 7e-16 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 |||||| ||||| ||||| || || |||| || ||||| || || ||||| Sbjct 54150 GTCAAATCGAAAATCCAGGACAAGGAGGGCATTCCACCTGACCAGCAGCGATTGATTTTC 54209 Query 27925 GCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTACAACATCCAAAAAGAGAG 27983 || || || || ||||| |||| ||| | |||| ||||| ||||||||||| || ||| Sbjct 54210 GCTGGCAAGCAGTTGGAAGACGGACGAACGCTT-TCCGACTACAACATCCAGAAGGAGTC 54268 Query 27984 CACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||||||||| ||||| ||||| Sbjct 54269 GACTTTGCACTTGGTTTTGCGATTGCGAGGCGG 54301 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || | ||| || ||||||||||| || ||||| ||||| || ||||| Sbjct 54396 GACAAGGAGGGCATCCCGCCTGACCAGCAACGGTTGATCTTTGCGGGAAAGCAGTTGGAG 54455 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| || | ||||| ||||||||||| || || ||| || | |||||||| ||| Sbjct 54456 GACGGTCGAACTTTGTCGGATTACAACATTCAGAAGGAGTCTACACTCCATTTGGTCTTG 54515 Query 28003 CGTTTGCGTGGCGG 28016 || |||| || || Sbjct 54516 CGACTGCGAGGTGG 54529 >seq334 Length=295082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | || || ||||| || || || || ||||| || || | || Sbjct 55779 GACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAA 55720 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | | ||||||| ||||||||||| || ||| |||||||| ||||| ||| Sbjct 55719 GATGGCCGAACCCTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCACTTGGTCTTG 55660 Query 28003 CGTTTGCGTGGCGG 28016 || |||||||| || Sbjct 55659 CGATTGCGTGGTGG 55646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355858782881118