Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq101 181 2e-40 seq20 174 4e-38 seq334 100 7e-16 >seq101 Length=212447 Score = 181 bits (200), Expect = 2e-40 Identities = 160/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || | ||| | ||| | ||| ||||| || |||||||| || |||| |||||| Sbjct 117779 CGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTT 117838 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| ||||| ||||| |||||||| || || || || |||||||||| |||| Sbjct 117839 CGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGAATTCCT 117898 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| ||| || |||||||| Sbjct 117899 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGG 117958 Query 211074 GTGATCGTCTTTCCCGTGAG 211093 ||||| ||||| |||||||| Sbjct 117959 GTGATGGTCTTACCCGTGAG 117978 >seq20 Length=67849 Score = 174 bits (192), Expect = 4e-38 Identities = 159/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || ||||| ||||| |||||||| || || || ||||| ||||||| || || | ||| Sbjct 53605 CTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAGAGAGTTCGACCA 53546 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 ||||| || ||||| || |||||||| | ||||| || ||||| |||| |||||||||| Sbjct 53545 TCTTCAAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGGAATTCCTTCCTTG 53486 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 ||||| ||||| || || || ||||| ||||| ||| || || |||||||||||| Sbjct 53485 TCCTGAATCTTGGACTTGACATTGTCGATTGTGTCGGAGGACTCGACTTCGAGAGTGATC 53426 Query 211080 GTCTTTCCCGTGAGAGTCTTT 211100 |||||||| ||||| |||||| Sbjct 53425 GTCTTTCCGGTGAGGGTCTTT 53405 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | ||| ||||| || |||||||| || || | ||| || | ||| ||||||| ||| Sbjct 54278 GTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGTCCGTCTTCCAACTG 54219 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| ||||| || | || || |||||||| |||| || |||||||||||||| || Sbjct 54218 CTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGGATTTT 54159 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| ||||| || |||||||| || || || ||||||||||| |||||||| || Sbjct 54158 CGATTTGACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGAGTGATAGTCTTTCCAGT 54099 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || | |||||| Sbjct 54098 GAGTGTCTTGACGAAGATCTGCAT 54075 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || | ||| || || || || ||||| || || | || || | |||||| Sbjct 54058 AGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGACCATCT 53999 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| || || ||||| || | || || ||||||||||||| ||||||||||||| Sbjct 53998 TCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 53939 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| || ||||| |||||||| || ||| || || || | || ||| Sbjct 53938 TGGATCTTGCTCTTAACGTTGTCGATGGTATC---GCTCGACTCGACTTCCAAGGTAATC 53882 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || |||||||| || || | |||||| Sbjct 53881 GTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| | ||| | || || || ||||| || || ||||| ||||||| | || Sbjct 54523 CGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGACAAAGTT 54464 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||| |||||| || || ||||| | ||||| |||||||| || | || Sbjct 54463 CGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGGGATGCCC 54404 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || ||||| || || || || || ||| || || || Sbjct 54403 TCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGACTTCAAGG 54344 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||||| || | ||||| || || | |||||| Sbjct 54343 GTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 >seq334 Length=295082 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| | ||| | ||| ||||| || |||||||| || || | ||||| | |||||||| Sbjct 55663 GACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCTTC 55722 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 ||||||||||| |||||||| | || || |||||||| || | ||||||||||| || Sbjct 55723 GAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTGTCTTG 55782 Query 211025 GATCT 211029 |||| Sbjct 55783 AATCT 55787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159139613736410