Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq20 131 1e-25 seq101 96.9 2e-15 >seq20 Length=67849 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| ||||| || |||||||||||||| || || || Sbjct 54075 ATGCAGATCTTCGTCAAGACACTCACTGGAAAGACTATCACTCTCGAAGTCGAGTCTTCG 54134 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | ||| ||||| ||||| || || | || || || || Sbjct 54135 GACACCATTGACAACGTCAAATCGAAAATCCAGGACAAGGAGGGCATTCCACCTGACCAG 54194 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || || ||||| || ||||||||| ||| || | ||| |||||| Sbjct 54195 CAGCGATTGATTTTCGCTGGCAAGCAGTTGGAAGACGGACGAACGCTTTCCGACTACAAC 54254 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || || || || ||||| | |||||||| || Sbjct 54255 ATCCAGAAGGAGTCGACTTTGCACTTGGTTTTGCGATTGCGAGGCGG 54301 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || ||||| |||||||| || ||||| || || || Sbjct 54303 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACGATCACCCTTGAAGTCGAATCTTCG 54362 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | | || || ||| ||||| || || | ||||| || || Sbjct 54363 GATACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 54422 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || ||||| || || || |||| |||| || ||||| ||||||||| Sbjct 54423 CAACGGTTGATCTTTGCGGGAAAGCAGTTGGAGGACGGTCGAACTTTGTCGGATTACAAC 54482 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| ||| | ||||| || || | ||||||| || Sbjct 54483 ATTCAGAAGGAGTCTACACTCCATTTGGTCTTGCGACTGCGAGGTGG 54529 Score = 107 bits (118), Expect = 1e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 23626 AAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AAT 23684 || |||||||| ||||| ||||||||||||||||| || ||| | ||||| | || ||| Sbjct 53406 AAGACCCTCACCGGAAAGACGATCACTCTCGAAGTCGAGTCCTCCGACACAATCGACAAT 53465 Query 23685 ATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATT 23744 | || | || | || ||||| ||||| | || || ||||| || || || || || Sbjct 53466 GTCAAGTCCAAGA-TTCAGGACAAGGAAGGAATTCCCCCTGATCAGCAACGATTGATCTT 53524 Query 23745 TGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTC 23804 ||||| || ||||| ||||| | || ||| | ||||||||||| || || || || Sbjct 53525 CGCCGGAAAGCAACTTGAAGATGGTCGAACTCTCTCGGATTACAACATTCAGAAGGAATC 53584 Query 23805 CACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| | || | || | |||||||| || || Sbjct 53585 CACTCTCCACCTCGTCCTGAGGTTGCGGGGTGG 53617 >seq101 Length=212447 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAA 23690 ||||||||| || || ||||| ||||| || || ||| ||||||| | || | | || Sbjct 117979 CCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAA 117920 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 || || ||||| ||||| | || || ||||| ||||| | || || ||||| Sbjct 117919 GTCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAGCGACTCATCTTCGCCGG 117860 Query 23751 CAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACAACATACAAAAAGAGTCCACA 23808 |||||| || ||||| | || | |||| | || |||||||| || || ||||| || Sbjct 117859 CAAACAGCTCGAAGATGGTCGAACCCTTTCG--GACTACAACATCCAGAAGGAGTCTACT 117802 Query 23809 TTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || ||| ||||||| || Sbjct 117801 TTGCACTTGGTCTTGAGGCTGCGAGGTGG 117773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006164343672