Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq20 111 4e-19 seq101 95.1 3e-14 seq334 84.2 5e-11 >seq20 Length=67849 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| ||||| || ||||||||||| |||| | |||| || ||||| | Sbjct 54281 CAAG-TGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGTCCGTCTTCCA 54223 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || ||||| || | | ||||||||| | | || || ||||| || || | Sbjct 54222 ACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGGA 54163 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| |||||| | || | | |||| ||| ||| ||||| ||||| ||||| || | Sbjct 54162 TTTTCGATTTGACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGAGTGATAGTCTTTC 54103 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||||| |||||| Sbjct 54102 CAGTGAGTGTCTTGACGAAGATCTGCAT 54075 Score = 107 bits (118), Expect = 4e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949 || ||||| || || ||||| || || || || ||||||||||| | | ||||| ||| Sbjct 53605 CTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAGAGAGTTCGACCA 53546 Query 151950 TCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCT 152007 ||||| || ||||| ||||||||||| | | ||||| || | | |||||||||| Sbjct 53545 TCTTCAAGTTGCTTT--CCGGCGAAGATCAATCGTTGCTGATCAGGGGGAATTCCTTCCT 53488 Query 152008 TTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAA 152067 | || ||||| || |||||| | || | |||| || ||| ||||| ||||| | Sbjct 53487 TGTCCTGAATCTTGGACTTGACATTGTCGATTGTGTCGGAGGACTCGACTTCGAGAGTGA 53428 Query 152068 TAGTTTTGCCCGTGAGAGTCTT 152089 | || || || ||||| ||||| Sbjct 53427 TCGTCTTTCCGGTGAGGGTCTT 53406 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| | ||| || || || || |||||||| |||| | ||||| |||||| Sbjct 54058 AGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGACCATCT 53999 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| |||||||| || | | ||||||||| | | ||||||||||| || Sbjct 53998 TCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 53939 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || | || | | | || ||| ||||| | ||||| || Sbjct 53938 TGGATCTTGCTCTTAACGTTGTCGATGGTATCGCTCGACTCGACTTCCAAGGTAATCGTC 53879 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||||| |||||| Sbjct 53878 TTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| | ||| | ||| || |||||||| || || ||||||||||| | ||||||| Sbjct 54520 AGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGACAAAGTTCGA 54461 Query 151947 CCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || || || | ||||| || || ||||| | || |||||||| | || ||| || | Sbjct 54460 CCGTCCTCCAACTGCTTT--CCCGCAAAGATCAACCGTTGCTGGTCAGGCGGGATGCCCT 54403 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || ||||| || ||||| | || | | || ||| || |||||||| | Sbjct 54402 CCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGACTTCAAGGG 54343 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || || | ||||| ||||||| |||||| Sbjct 54342 TGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 >seq101 Length=212447 Score = 95.1 bits (104), Expect = 3e-14 Identities = 134/187 (72%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||||||||| || ||||||||||| || | | |||| |||||||| | Sbjct 117793 CAAG-TGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGACCATCTTCGA 117851 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||||||||| || | |||||| || | | ||||||||||| || || | Sbjct 117852 GCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGA 117911 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | |||| || ||| || || || || || || || | Sbjct 117912 TCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTAC 117971 Query 152077 CCGTGAG 152083 ||||||| Sbjct 117972 CCGTGAG 117978 >seq334 Length=295082 Score = 84.2 bits (92), Expect = 5e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| ||||| || ||||||||||| |||| | |||| |||||||| | Sbjct 55666 CAAG-TGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCTTCGA 55724 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||||||||| | | ||||||||| | | ||| |||||||| ||||||| Sbjct 55725 GCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTGTCTTGAA 55784 Query 152017 T 152017 | Sbjct 55785 T 55785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153808470703614