Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555
.1_202015-11-17] 834 sequences; 24,807,186 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq20 111 4e-19
seq101 95.1 3e-14
seq334 84.2 5e-11
>seq20
Length=67849
Score = 111 bits (122), Expect = 4e-19
Identities = 150/208 (72%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || | ||| ||||| || ||||||||||| |||| | |||| || ||||| |
Sbjct 54281 CAAG-TGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGTCCGTCTTCCA 54223
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
|| || ||||| || | | ||||||||| | | || || ||||| || || |
Sbjct 54222 ACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGGA 54163
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
|||| |||||| | || | | |||| ||| ||| ||||| ||||| ||||| || |
Sbjct 54162 TTTTCGATTTGACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGAGTGATAGTCTTTC 54103
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||||| ||||| ||||||| ||||||
Sbjct 54102 CAGTGAGTGTCTTGACGAAGATCTGCAT 54075
Score = 107 bits (118), Expect = 4e-18
Identities = 146/202 (72%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 151890 CTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCA 151949
|| ||||| || || ||||| || || || || ||||||||||| | | ||||| |||
Sbjct 53605 CTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGAGAGAGTTCGACCA 53546
Query 151950 TCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCT 152007
||||| || ||||| ||||||||||| | | ||||| || | | ||||||||||
Sbjct 53545 TCTTCAAGTTGCTTT--CCGGCGAAGATCAATCGTTGCTGATCAGGGGGAATTCCTTCCT 53488
Query 152008 TTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAA 152067
| || ||||| || |||||| | || | |||| || ||| ||||| ||||| |
Sbjct 53487 TGTCCTGAATCTTGGACTTGACATTGTCGATTGTGTCGGAGGACTCGACTTCGAGAGTGA 53428
Query 152068 TAGTTTTGCCCGTGAGAGTCTT 152089
| || || || ||||| |||||
Sbjct 53427 TCGTCTTTCCGGTGAGGGTCTT 53406
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||| | ||| || || || || |||||||| |||| | ||||| ||||||
Sbjct 54058 AGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGACCATCT 53999
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| |||||||| || | | ||||||||| | | ||||||||||| ||
Sbjct 53998 TCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 53939
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || || | || | | | || ||| ||||| | ||||| ||
Sbjct 53938 TGGATCTTGCTCTTAACGTTGTCGATGGTATCGCTCGACTCGACTTCCAAGGTAATCGTC 53879
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||| ||||||| ||||||
Sbjct 53878 TTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847
Score = 98.7 bits (108), Expect = 2e-15
Identities = 155/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
|||| | ||| | ||| || |||||||| || || ||||||||||| | |||||||
Sbjct 54520 AGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGACAAAGTTCGA 54461
Query 151947 CCATCTTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004
|| || || | ||||| || || ||||| | || |||||||| | || ||| || |
Sbjct 54460 CCGTCCTCCAACTGCTTT--CCCGCAAAGATCAACCGTTGCTGGTCAGGCGGGATGCCCT 54403
Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064
|||| || ||||| || ||||| | || | | || ||| || |||||||| |
Sbjct 54402 CCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGACTTCAAGGG 54343
Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || || || || | ||||| ||||||| ||||||
Sbjct 54342 TGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303
>seq101
Length=212447
Score = 95.1 bits (104), Expect = 3e-14
Identities = 134/187 (72%), Gaps = 1/187 (1%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || | ||||||||| || ||||||||||| || | | |||| |||||||| |
Sbjct 117793 CAAG-TGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGACCATCTTCGA 117851
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||| ||||||||||| || | |||||| || | | ||||||||||| || || |
Sbjct 117852 GCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGA 117911
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || ||||| | || | | |||| || ||| || || || || || || || |
Sbjct 117912 TCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTAC 117971
Query 152077 CCGTGAG 152083
|||||||
Sbjct 117972 CCGTGAG 117978
>seq334
Length=295082
Score = 84.2 bits (92), Expect = 5e-11
Identities = 92/121 (76%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || | ||| ||||| || ||||||||||| |||| | |||| |||||||| |
Sbjct 55666 CAAG-TGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCTTCGA 55724
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || ||||||||||| | | ||||||||| | | ||| |||||||| |||||||
Sbjct 55725 GCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTGTCTTGAA 55784
Query 152017 T 152017
|
Sbjct 55785 T 55785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153808470703614
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |