Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq20 172 1e-37 seq101 138 2e-27 seq334 100 6e-16 seq279 91.5 3e-13 seq501 89.7 1e-12 >seq20 Length=67849 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || |||| || || || || || |||||||||||||| | Sbjct 53846 ACCGCCTCGGAGTCGGAGAACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTCGGA 53787 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || |||||||| || ||||| || ||||| |||||||| ||||| || ||| || Sbjct 53786 AAGTGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGG 53727 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| ||||| || ||||| | || ||| | |||||||||||||||| |||||| Sbjct 53726 GATACCCTCTTTGTCCTGAATCTTAGACTTGACGTTGTCGATAGTGTCCGAAGATTCGAC 53667 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 53666 CTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATTTGCAT 53619 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| || | |||| ||| | || || || || |||||||| || | Sbjct 54530 ACCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGA 54471 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || || ||||| | || || || ||||||||||| ||||| |||||| ||| Sbjct 54470 CAAAGTTCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGG 54411 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| | || ||| | || ||||| ||||||| |||||| Sbjct 54410 GATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGAC 54351 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 54350 TTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 Score = 156 bits (172), Expect = 9e-33 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | |||||| || || || || | || || || || || Sbjct 54265 TCCTTCTGGATGTTGTAGTCGGAAAGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAA 54206 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || |||||| ||||| ||||||||||| ||||| || | ||| ||| | Sbjct 54205 ATCAATCGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCCTGGATTTTCGATTTGACGTTG 54146 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||||| ||||||||||||||||| ||||| || || | ||||| ||| Sbjct 54145 TCAATGGTGTCCGAAGACTCGACTTCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACG 54086 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 54085 AAGATCTGCAT 54075 Score = 154 bits (170), Expect = 3e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || ||||| |||| ||| || || ||| || || ||||||||||| | Sbjct 54074 ACCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGA 54015 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || || ||||| ||||| || |||||||| || |||||| || Sbjct 54014 CAGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGG 53955 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || |||||||| |||||| ||||| || ||| | ||||| || || | |||| Sbjct 53954 AATTCCTTCCTTGTCCTGGATC-TTGCTCTTAACGTTGTCGATGGTATCGCTCGACTCGA 53896 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | || |||||||| || |||| |||||| ||||| |||||||| Sbjct 53895 CTTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 136 bits (150), Expect = 8e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||| | || || || || | ||| ||| || || |||||||| || | Sbjct 53618 ACCACCCCGCAACCTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCCGA 53559 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || ||||| || ||||| |||||||| ||||| || ||| || Sbjct 53558 GAGAGTTCGACCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGGGGG 53499 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| || ||||| | || || | ||||| ||||| || | ||||| Sbjct 53498 AATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATTGTGTCGGAGGACTCGAC 53439 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTT 283084 |||||||||||||||||| || || | ||||| Sbjct 53438 TTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTT 53406 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||||| | || | || || || | || || |||||||||||||| || || | Sbjct 54775 TGTAGTCAGACAAAGTCCTACCGTCTTCCAACTGCTTTCCGGCAAAGATCAATCGCTGCT 54716 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| ||||| || || ||||| || ||||| | || || | || || || |||| Sbjct 54715 GGTCGGGGGGAATGCCTTCTTTGTCCTGAATCTTCGACTTGACATTGTCAATCGTATCCG 54656 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083 | | |||||||| | ||||| ||||| || |||| ||||| Sbjct 54655 ACGACTCGACTTCCAACGTGATAGTCTTTCCGGTCAGAGTCT 54614 >seq101 Length=212447 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| | | |||| || || || || || |||||||||||||| | Sbjct 117772 ACCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGA 117831 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || || ||||| ||||| ||||| | || || || ||| || Sbjct 117832 AAGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGG 117891 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 117892 AATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGAC 117951 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||||||||| Sbjct 117952 CTCGAGGGTGATGGTCTTACCCGT 117975 >seq334 Length=295082 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||| || | |||| || || || || || |||||||||||||| | Sbjct 55645 ACCACCACGCAATCGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGA 55704 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || || || || ||||| |||||||| || || |||||| || Sbjct 55705 CAGGGTTCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGG 55764 Query 282992 AATACCCTCCTTGTCTTGGATCT 283014 ||||| ||||||||||| |||| Sbjct 55765 GATACCTTCCTTGTCTTGAATCT 55787 >seq279 Length=165861 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 315650 TGTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGA 315709 |||| |||| |||| || |||||| |||| ||| | || || || || | | Sbjct 162412 TGTGGGTAATGACCAAGACACCACCTTCGAACGACTTCAAGGCTTCGATCAACGCGGCCA 162471 Query 315710 --GACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTG 315767 |||||||| ||||| ||||||||||||| || | | ||||||||||||| || | Sbjct 162472 AGGACTCTCG--GTCCAAGTAGTTGGTCGGCTCGTCCAAACAGATGACGTGGGGTCGTCG 162529 Query 315768 CCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATG 315825 |||| |||||| |||| |||| ||| | ||||| ||||| ||||| || || ||| Sbjct 162530 CCATGTAGCGGCACCGAGGACGACCTTGACCTTTTGACCACCGGACAGACCTCGCATG 162587 >seq501 Length=137356 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| | | |||||| | ||||| || |||||| || || || | Sbjct 92882 CTCATCGGCATGAACGAAAAGCTCATGTGCCAATACATTCGATTCGTCGCCGACCGATTG 92823 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || |||| || ||||| ||| | ||||| |||| ||||||||| Sbjct 92822 CTCGTCGCACTCGGAAACGACAAGGTGTACAACGATACCAACCCGTTCGACTTTATGGAG 92763 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGT 230386 |||||| || ||||| ||| | ||||| ||||| |||||| Sbjct 92762 AACATTTCGCTGCAGGGTAAAGCCAACTTTTTCGAGTCGCGTGT 92719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046728014937436