Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq20 120 2e-22 seq101 104 2e-17 >seq20 Length=67849 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| |||| | |||| ||| | || |||||| ||||||||||| || Sbjct 53849 CATACCGCCTCGGAGTCGGAGAACCAAGTGCAAGGTAGACTCCTTCTGGATGTTGTAGTC 53790 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || || || ||||| ||||| |||||||| || |||||||| | Sbjct 53789 GGAAAGTGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATCAGG 53730 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| || || ||| ||||| ||| | | | || ||||| | ||||| Sbjct 53729 GGGGATACCCTCTTTGTCCTGAATCTTAGACTTGACGTTGTCGATAGTGTCCGAAGATTC 53670 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || || |||||||| || | |||||| |||||||||||||| Sbjct 53669 GACCTCCAAGGTGATTGTCTTTCCGGTCAAGGTCTTGACGAAGATTTGCAT 53619 Score = 116 bits (128), Expect = 3e-21 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 ||||| || |||||||| |||| ||||| || | || || ||||| || ||||| | Sbjct 54037 TCCTTCTGAATGTTGTAGTCGGACAGAGTT--CGACCATCTTCAAGCTGTTTTCCGGCGA 53980 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 | |||||||||||||| || | ||| | |||||||| ||| ||||| ||| || | Sbjct 53979 AAATCAAACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGCTCTT-AACG 53921 Query 44265 TTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | ||||| ||| || || || |||| |||||||||||||| || || ||||| Sbjct 53920 TTGTCGATGGTATCGCTCGACTCGACTTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTG 53861 Query 44324 ACGAAGATTTGCAT 44337 |||||||| ||||| Sbjct 53860 ACGAAGATCTGCAT 53847 Score = 114 bits (126), Expect = 9e-21 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || |||| || ||||| || ||| ||||| || |||||||| Sbjct 53624 TTGCATACCACCCCGCAACCTCAGGACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTA 53565 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| || | || || || ||||| ||||| |||||||| || |||||||| Sbjct 53564 ATCCGAGAGAGTTCGACCATCTTCAAGTTGCTTTCCGGCGAAGATCAATCGTTGCTGATC 53505 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 | || | |||||||| ||| ||||| ||| || ||| | || ||||||| | Sbjct 53504 AGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGT--CGATTGTGTCGGAG 53447 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTT 44322 || || || || | || ||||||||||| ||||||||||| Sbjct 53446 GACTCGACTTCGAGAGTGATCGTCTTTCCGGTGAGGGTCTT 53406 Score = 114 bits (126), Expect = 9e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || || ||| |||| ||| | || |||||| ||||||||||| || Sbjct 54305 CATACCGCCTCGCAATCGCAAAACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTC 54246 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || |||| |||| |||||| || || || ||||| |||||||| || | Sbjct 54245 GGAAAGCGTTCGTCCGTCTTCCAACTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGG 54186 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 || | || ||||| ||| || ||| | || | ||| | |||||||| | || | Sbjct 54185 TGGAATGCCCTCCTTGTCCTGGATTTTC-GATTTGACGTTGTCAATGGTGTCCGAAGACT 54127 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || |||||||| ||||| ||||| |||||||| ||||| Sbjct 54126 CGACTTCGAGAGTGATAGTCTTTCCAGTGAGTGTCTTGACGAAGATCTGCAT 54075 Score = 113 bits (124), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||||| ||| |||| || || || |||||| || ||||||||||| Sbjct 54533 CATACCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATC 54474 Query 44167 GGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | | ||| || |||| |||| |||||| || ||||||||||| || ||||| || Sbjct 54473 CGACAAAGTT--CGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCA 54416 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | || ||||| ||| ||||| ||| | | | || || || | ||| Sbjct 54415 GGCGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGAT 54356 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || ||||||||||| || | |||||| |||||||| ||||| Sbjct 54355 TCGACTTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| |||| |||||| |||||||||||||| |||||||| || | || | ||||| | Sbjct 54754 CGTCTTCCAACTGCTTTCCGGCAAAGATCAATCGCTGCTGGTCGGGGGGAATGCCTTCTT 54695 Query 44241 TTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 | ||| |||||| ||| || ||| | || || || | || || || |||| ||| Sbjct 54694 TGTCCTGAATCTTCGACTTGACATTGT--CAATCGTATCCGACGACTCGACTTCCAACGT 54637 Query 44299 AATCGTCTTTCCCGTGAGGGTCT 44321 || |||||||| || || |||| Sbjct 54636 GATAGTCTTTCCGGTCAGAGTCT 54614 >seq101 Length=212447 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| ||| ||||| |||| ||| | || |||||| ||||||||||| || | Sbjct 117773 CCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCCGAA 117832 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || || ||||| || ||||| ||||| | ||||||||||| | ||| Sbjct 117833 AGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGGAGGA 117892 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||| | | | |||||||| | ||| || ||| Sbjct 117893 ATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 117952 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || || ||||| ||||||||| Sbjct 117953 TCGAGGGTGATGGTCTTACCCGTGAGG 117979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986740922578