Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq101 167 6e-36 seq20 161 2e-34 seq334 102 2e-16 >seq101 Length=212447 Score = 167 bits (184), Expect = 6e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || |||||||||||||| || ||| ||||||||||| |||||||| Sbjct 117978 CTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 117919 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| |||||||| ||||| || ||||| ||||| ||||||||||| Sbjct 117918 TCCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAGCGACTCATCTTCGCCGGC 117859 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||||||||||||||| | || ||| | || || ||| |||| || || || || || Sbjct 117858 AAACAGCTCGAAGATGGTCGAACCCTTTCGGACTACAACATCCAGAAGGAGTCTACTTTG 117799 Query 178122 CATCTTGTTTTGAGACT 178138 || | || ||||| || Sbjct 117798 CACTTGGTCTTGAGGCT 117782 >seq20 Length=67849 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || ||||| || |||||| | ||||| ||| || ||| Sbjct 53622 CAAATCTTCGTCAAGACCTTGACCGGAAAGACAATCACCTTGGAGGTCGAATCTTCGGAC 53681 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||||||||||||||| || ||||| || || |||||| Sbjct 53682 ACTATCGACAACGTCAAGTCTAAGATTCAGGACAAAGAGGGTATCCCCCCTGATCAGCAA 53741 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||||||||| || ||||||||||| | || ||| |||| || ||| || Sbjct 53742 CGATTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACACTTTCCGACTACAACATC 53801 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || |||| | ||| | ||||| || Sbjct 53802 CAGAAGGAGTCTACCTTGCACTTGGTTCTCCGACTCCGA 53840 Score = 156 bits (172), Expect = 1e-32 Identities = 157/203 (77%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 177934 TGAAA-ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 ||||| || ||||| ||||| |||||||| ||||| || || ||| ||||| ||||| Sbjct 53403 TGAAAGACCCTCACCGGAAAGACGATCACTCTCGAAGTCGAGTCCTCCGACACAATCGAC 53462 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || ||||| |||||||||||||| |||||||| || || || ||||||||| | ||| Sbjct 53463 AATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAGCAACGATTGATC 53522 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 ||||||||||| || || |||||||| | ||||| | ||||| ||| | || || ||| Sbjct 53523 TTCGCCGGAAAGCAACTTGAAGATGGTCGAACTCTCTCGGATTACAACATTCAGAAGGAA 53582 Query 178113 TCAACACTGCATCTTGTTTTGAG 178135 || || || || || || |||| Sbjct 53583 TCCACTCTCCACCTCGTCCTGAG 53605 Score = 140 bits (154), Expect = 8e-28 Identities = 154/204 (75%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || ||||| || ||||| || ||||| ||||| ||| | || || || ||| Sbjct 53850 CAGATCTTCGTCAAGACTCTGACCGGAAAGACGATTACCTTGGAAGTCGAGTCGAGC--- 53906 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || |||||||| ||||| || ||||| |||||||| |||||||| ||||| |||||| Sbjct 53907 GATACCATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAAGGAATTCCTCCTGACCAG 53966 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | || ||||||||||||||||| |||||||| | ||||| |||| || ||| Sbjct 53967 CAGCGTTTGATTTTCGCCGGAAAACAGCTTGAAGATGGTCGAACTCTGTCCGACTACAAC 54026 Query 178101 GTCCAAAAAGAATCAACACTGCAT 178124 | || || ||||| || ||||| Sbjct 54027 ATTCAGAAGGAATCGACTTTGCAT 54050 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| ||||||||||| || || ||| || || Sbjct 54306 CAGATCTTCGTCAAGACCTTGACCGGAAAGACGATCACCCTTGAAGTCGAATCTTCGGAT 54365 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| |||||||||||||| || || ||||| || ||||||||| Sbjct 54366 ACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAGCAA 54425 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| ||| | || || || | ||| | | ||||| ||| | Sbjct 54426 CGGTTGATCTTTGCGGGAAAGCAGTTGGAGGACGGTCGAACTTTGTCGGATTACAACATT 54485 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || ||||| ||| | || ||| |||| Sbjct 54486 CAGAAGGAGTCTACACTCCATTTGGTCTTGCGACT 54520 Score = 104 bits (114), Expect = 6e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 ||||| || ||||| || ||||| | || || || || || || || || || ||| Sbjct 54616 ACTCTGACCGGAAAGACTATCACGTTGGAAGTCGAGTCGTCGGATACGATTGACAATGTC 54675 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || |||||||||||||||||||| || || || |||||||| ||| | ||||| ||| Sbjct 54676 AAGTCGAAGATTCAGGACAAAGAAGGCATTCCCCCCGACCAGCAGCGATTGATCTTTGCC 54735 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACT 178085 ||||| ||| | ||||| || |||||| Sbjct 54736 GGAAAGCAGTTGGAAGACGGTAGGACT 54762 >seq334 Length=295082 Score = 102 bits (112), Expect = 2e-16 Identities = 97/123 (79%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 ||||||| ||||| ||||| ||||| || |||||||| ||| | ||||||||||| || | Sbjct 55787 AGATTCAAGACAAGGAAGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGCAAGC 55728 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 ||||||||||||| | || || |||| || ||| |||| || || || || |||| | Sbjct 55727 AGCTCGAAGATGGCCGAACCCTGTCCGACTACAACATCCAGAAGGAGTCGACTTTGCA-C 55669 Query 178126 TTG 178128 ||| Sbjct 55668 TTG 55666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203718337379796