Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20albidus_20var._20albidus_20[genbank_20GCA_5F001444555 .1_202015-11-17] 834 sequences; 24,807,186 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq20 134 1e-26 seq334 95.1 1e-14 seq101 89.7 5e-13 >seq20 Length=67849 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || |||||||||||||| |||||||| Sbjct 54073 CCTCCTCGGAGACGAAGGACCAAATGCAAAGTCGATTCCTTCTGAATGTTGTAGTCGGAC 54014 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||| || |||||||| |||| ||||| ||||| | ||| Sbjct 54013 AGAGTTCGACCATCTTCAAGCTGTTTTCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGA 53954 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||| |||| | | | || ||||||||||| || Sbjct 53953 ATTCCTTCCTTGTCCTGGATCTTGCTCTT-AACGTTGTCGATGGTATCGCTCGACTCGAC 53895 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| || || ||||| ||||| ||||| |||||||| Sbjct 53894 TTCCAAGGTAATCGTCTTTCCGGTCAGAGTCTTGACGAAGATCTGCAT 53847 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || || |||| ||| || || ||||||||||||||| || || || Sbjct 54529 CCACCTCGCAGTCGCAAGACCAAATGGAGTGTAGACTCCTTCTGAATGTTGTAATCCGAC 54470 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || |||| || | |||||| || || || |||| || || ||||| | || Sbjct 54469 AAAGTTCGACCGTCCTCCAACTGCTTTCCCGCAAAGATCAACCGTTGCTGGTCAGGCGGG 54410 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || | | ||| | | | ||| || || || || Sbjct 54409 ATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCAATAGTATCCGAAGATTCGAC 54351 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || ||||| || || |||| ||||| ||||| |||||||| Sbjct 54350 TTCAAGGGTGATCGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 54303 >seq334 Length=295082 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || || |||| |||| || ||||||||| ||||| |||||||| ||||| || | Sbjct 55658 CGCAAGACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCA 55717 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || |||||||||||||||||||| |||| ||||| ||||| | ||| | | |||||| Sbjct 55718 TCTTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCTTCCTTG 55777 Query 41768 TC 41769 || Sbjct 55778 TC 55779 >seq101 Length=212447 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || | || |||| |||| || ||||||||| ||||| ||||| Sbjct 117769 ACCACCACCTCGCAGCCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTC 117828 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || ||||| || | || |||||||| ||||||||||| || || ||||| || || | Sbjct 117829 CGAAAGGGTTCGACCATCTTCGAGCTGTTTGCCGGCGAAGATGAGTCGCTGCTGATCAGG 117888 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 |||| | ||||||||| ||| || ||| ||| | | | ||||| |||| Sbjct 117889 AGGAATTCCTTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCCGAGGACT 117947 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 | ||||| | || || || |||||||| || Sbjct 117948 CGACCTCGAGGGTGATGGTCTTACCCGTGAG 117978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299180480800