Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq95 134 2e-26
seq6 122 1e-22
>seq95
Length=57217
Score = 134 bits (148), Expect = 2e-26
Identities = 756/1203 (63%), Gaps = 78/1203 (6%)
Strand=Plus/Minus
Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764
|||| ||| || || ||||| ||||| ||||||| | | | ||| | || || |||
Sbjct 51272 GCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCA 51213
Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824
|| || |||||||| |||| ||||| || | | | ||| || ||| |||
Sbjct 51212 GTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCG 51153
Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884
|||||||||||| ||| | || |||||| || |||| | || | || || |
Sbjct 51152 GCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGCGAAC 51093
Query 53885 CAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT----TCGTA--TAGT 53938
|| | | | | |||| |||| ||| | || | || | || ||||| |
Sbjct 51092 CAAA-GCTTCTGGGCTTTG--ATAGTTTT-TCTCCCCTTACCCTGCCTCTCGTAGCTCTC 51037
Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 53998
||| | || ||||| || ||||| | || | | | | |||||||| ||| | |||
Sbjct 51036 GTAAAGCTTC--TCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGA 50979
Query 53999 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 54058
||||| | | ||| || || || | || || ||||| || ||||| || |||||
Sbjct 50978 CACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAG 50919
Query 54059 AGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGAT 54116
|| || || ||| ||||| | | || ||||| || || ||||| ||||| |
Sbjct 50918 AGGGCGTAGAAA-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-T 50861
Query 54117 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCC 54176
| | ||| | | | ||||| ||||| || || | || |||| | | ||||| |
Sbjct 50860 CAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGAC 50801
Query 54177 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 54236
| ||||| || || || || | ||||| ||| ||| | |||| ||| | ||| ||||
Sbjct 50800 GCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAA 50741
Query 54237 TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTAC 54296
| ||||| || || ||| ||||| |||| || ||| || | ||||| |||||
Sbjct 50740 TGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGT 50681
Query 54297 TAAT-TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 54355
||| ||| ||||| || || || || | || ||||| || || || | |||
Sbjct 50680 GAATGTGA-AGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTA 50622
Query 54356 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 54415
|| ||||| || || || ||||||| ||||| | ||||| || ||||| |||
Sbjct 50621 TCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGG 50562
Query 54416 TGACGACTAGTTCCCGCATTAAATA----------------------------------- 54440
| || ||| || ||||| || |
Sbjct 50561 GGCCGGGGAGTACCGGCATTGAAAAGCTGTTATACTTGTCAGCAATGGGCGTTTCACAAT 50502
Query 54441 -----AG----------GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485
|| || || ||||| || || || | ||||||| | || ||||
Sbjct 50501 CAGTCAGAAAACTCACAGTTGGGGAAGCATGGGTGAAATACCTTTCAGACATGAGGTTGT 50442
Query 54486 ACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAAC 54544
| |||||||| || ||| || | || | || || || || ||||| ||||| | |
Sbjct 50441 AGGTCTCGATCACTTTGTCAATGTTGGCACCG-TGGATACCAACGGCGACTCGCATGATC 50383
Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604
||||||||||| | ||||| |||||| || || | || | ||| ||| | || | |
Sbjct 50382 ATGTGCTGAGGGCGCTCAACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGA 50323
Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGT 54664
|| || |||||||| |||||||| | |||||||| || |||||||| | |||| ||
Sbjct 50322 GTCTTGAAACCAAAGTAGTTGTAGGCAAAGTCTCTGTCATAAATAATGGCGGAGTCAAGG 50263
Query 54665 TTATCCTTATATTTGTTAACTACATCCATGGTAATACT--TGA--AATAATCGGAGAATG 54720
|||| || |||| | ||| || | |||| || | | ||| || ||||| ||
Sbjct 50262 ATATCTTT---GTTGTCCATGACAACC-TTGTAAACCTCATCATCAATCATGGGAGAGTG 50207
Query 54721 TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGttt 54780
|| || |||| || || || | | | ||| | || || | || | ||
Sbjct 50206 CTTGCCGGTTTTGGGGTTAACCCATGCATGAAGATCATGCACAACGGCTGAGAAAACCTT 50147
Query 54781 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 54840
|| || || ||||| || || || | ||| |||| ||| || ||||| |||||||| ||
Sbjct 50146 CTTGGTCTCCTTGTGAAGGTTGGAGATGGCGATTCGAGCAGCAAGAATAGCATAATCGGG 50087
Query 54841 ATG 54843
||
Sbjct 50086 GTG 50084
>seq6
Length=242052
Score = 122 bits (134), Expect = 1e-22
Identities = 180/253 (71%), Gaps = 3/253 (1%)
Strand=Plus/Minus
Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193
||| || || ||| ||| ||||||||||| | | || | ||||| || || |||||
Sbjct 183844 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAG 183785
Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253
|| ||||| || || ||||| || ||||| || ||||| || || || ||||| |||||
Sbjct 183784 ACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAA 183725
Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG--CGC-TGTCATG 24310
|| ||||| || || || || || || |||| || || ||| | ||| |||||
Sbjct 183724 GATACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCACCGAAACAAGATCGCTTGTCAGA 183665
Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370
||||| ||||||| |||||||||||| | |||||| || || || ||||| |
Sbjct 183664 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTC 183605
Query 24371 AAAGAGATAGTTT 24383
|| || |||||
Sbjct 183604 GAAAAGGAAGTTT 183592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593715818635920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |