Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq95 134 2e-26 seq6 122 1e-22 >seq95 Length=57217 Score = 134 bits (148), Expect = 2e-26 Identities = 756/1203 (63%), Gaps = 78/1203 (6%) Strand=Plus/Minus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 |||| ||| || || ||||| ||||| ||||||| | | | ||| | || || ||| Sbjct 51272 GCAAGAGAAGCGAGGTTACAGACGGCAACCTCATCGGGAGAAGAATACTCCATAATTTCA 51213 Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824 || || |||||||| |||| ||||| || | | | ||| || ||| ||| Sbjct 51212 GTACAGAGATTACTGGACTTAATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCG 51153 Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884 |||||||||||| ||| | || |||||| || |||| | || | || || | Sbjct 51152 GCATCCTTATAACAGATGTAAGGGACACCAGTCTCTGTCTGAGCCTCAAGGATAGCGAAC 51093 Query 53885 CAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT----TCGTA--TAGT 53938 || | | | | |||| |||| ||| | || | || | || ||||| | Sbjct 51092 CAAA-GCTTCTGGGCTTTG--ATAGTTTT-TCTCCCCTTACCCTGCCTCTCGTAGCTCTC 51037 Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 53998 ||| | || ||||| || ||||| | || | | | | |||||||| ||| | ||| Sbjct 51036 GTAAAGCTTC--TCAAATTCTTCTCCGTATACGTCGGCAAGCCCAGGACACTCAGCGGGA 50979 Query 53999 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 54058 ||||| | | ||| || || || | || || ||||| || ||||| || ||||| Sbjct 50978 CACATAAGGGTCCAGTCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGGGATCCAG 50919 Query 54059 AGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGAT 54116 || || || ||| ||||| | | || ||||| || || ||||| ||||| | Sbjct 50918 AGGGCGTAGAAA-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-T 50861 Query 54117 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCC 54176 | | ||| | | | ||||| ||||| || || | || |||| | | ||||| | Sbjct 50860 CAATGAAATCAAATACATCAGCGTGCCAGGGCTCAAGATAGATGGCGAAGGCACCAGGAC 50801 Query 54177 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 54236 | ||||| || || || || | ||||| ||| ||| | |||| ||| | ||| |||| Sbjct 50800 GCTTGTTGCCACCTTGGTCAACGTATCGAGCAGTGGCGTCATAAGCTCGGAGCATAGGAA 50741 Query 54237 TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTAC 54296 | ||||| || || ||| ||||| |||| || ||| || | ||||| ||||| Sbjct 50740 TGATACCGTTAGAGTAACCGTTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGT 50681 Query 54297 TAAT-TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 54355 ||| ||| ||||| || || || || | || ||||| || || || | ||| Sbjct 50680 GAATGTGA-AGACCAATACCACCAGCGGTCTTGGAGATCTGAGCACAAGTCTTGAGAGTA 50622 Query 54356 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 54415 || ||||| || || || ||||||| ||||| | ||||| || ||||| ||| Sbjct 50621 TCGTAGATACCATCAATGGAATCATCCTTCATGGCTACGAGAAAGCATGATGACATCTGG 50562 Query 54416 TGACGACTAGTTCCCGCATTAAATA----------------------------------- 54440 | || ||| || ||||| || | Sbjct 50561 GGCCGGGGAGTACCGGCATTGAAAAGCTGTTATACTTGTCAGCAATGGGCGTTTCACAAT 50502 Query 54441 -----AG----------GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 || || || ||||| || || || | ||||||| | || |||| Sbjct 50501 CAGTCAGAAAACTCACAGTTGGGGAAGCATGGGTGAAATACCTTTCAGACATGAGGTTGT 50442 Query 54486 ACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAAC 54544 | |||||||| || ||| || | || | || || || || ||||| ||||| | | Sbjct 50441 AGGTCTCGATCACTTTGTCAATGTTGGCACCG-TGGATACCAACGGCGACTCGCATGATC 50383 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||||||||| | ||||| |||||| || || | || | ||| ||| | || | | Sbjct 50382 ATGTGCTGAGGGCGCTCAACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGA 50323 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGT 54664 || || |||||||| |||||||| | |||||||| || |||||||| | |||| || Sbjct 50322 GTCTTGAAACCAAAGTAGTTGTAGGCAAAGTCTCTGTCATAAATAATGGCGGAGTCAAGG 50263 Query 54665 TTATCCTTATATTTGTTAACTACATCCATGGTAATACT--TGA--AATAATCGGAGAATG 54720 |||| || |||| | ||| || | |||| || | | ||| || ||||| || Sbjct 50262 ATATCTTT---GTTGTCCATGACAACC-TTGTAAACCTCATCATCAATCATGGGAGAGTG 50207 Query 54721 TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGttt 54780 || || |||| || || || | | | ||| | || || | || | || Sbjct 50206 CTTGCCGGTTTTGGGGTTAACCCATGCATGAAGATCATGCACAACGGCTGAGAAAACCTT 50147 Query 54781 ttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGG 54840 || || || ||||| || || || | ||| |||| ||| || ||||| |||||||| || Sbjct 50146 CTTGGTCTCCTTGTGAAGGTTGGAGATGGCGATTCGAGCAGCAAGAATAGCATAATCGGG 50087 Query 54841 ATG 54843 || Sbjct 50086 GTG 50084 >seq6 Length=242052 Score = 122 bits (134), Expect = 1e-22 Identities = 180/253 (71%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || ||| ||| ||||||||||| | | || | ||||| || || ||||| Sbjct 183844 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTGAG 183785 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| || || ||||| || ||||| || ||||| || || || ||||| ||||| Sbjct 183784 ACCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCAGAGAAGAA 183725 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG--CGC-TGTCATG 24310 || ||||| || || || || || || |||| || || ||| | ||| ||||| Sbjct 183724 GATACCTTCGACGGCAGCGAAAGCGATGAGTCGCTCACCGAAACAAGATCGCTTGTCAGA 183665 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| ||||||| |||||||||||| | |||||| || || || ||||| | Sbjct 183664 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGGATGGTGTCCATAGCGTC 183605 Query 24371 AAAGAGATAGTTT 24383 || || ||||| Sbjct 183604 GAAAAGGAAGTTT 183592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715818635920