Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 5e-12 >seq6 Length=242052 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| ||||| ||||| | || ||| || |||| || || || || || Sbjct 169323 GTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCG 169382 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || |||| | || ||||||||| || | ||||||||||| ||||| || Sbjct 169383 GCGAAAATTAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTG 169442 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || ||| || ||| || | || ||||| |||||||| | || Sbjct 169443 ACATTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTTTTGCCGGTAAGAGTC 169502 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 169503 TTGACGAAAATCTGCAT 169519 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | ||||||||| ||||||||||| ||||| | Sbjct 168496 CCACCACGGAGACGGAGGACAAGATGAAGAGTGGACTCTTTTTGAATGTTGTAGTCGGAA 168555 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||| || || || || ||| |||| |||| ||||| || ||| Sbjct 168556 AGGGTACGACCATCCTCTAGTTGCTTTCCGGCAAAAATGAGTCGTTGCTGATCGGGGGGG 168615 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||||||||||| |||||| Sbjct 168616 ATACCTTCCTTGTCTTGGATCTT 168638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422255191044764