Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq6 156 4e-33
>seq6
Length=242052
Score = 156 bits (172), Expect = 4e-33
Identities = 186/250 (74%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011
|||| || || || || || || || | |||||||||| ||||| || || ||||||
Sbjct 183606 ACGCTATGGACACCATCCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCT 183665
Query 117012 CCGGCAGAGAGGCCGCCTT-CGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070
| | || || | | || ||| ||||| || | || ||||| |||||||| || ||
Sbjct 183666 CTGACA-AGCGATCTTGTTTCGGTGAGCGACTCATCGCTTTCGCTGCCGTCGAAGGTATC 183724
Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130
||||| || || ||||||| |||| || ||||||||||| || || |||||||| ||
Sbjct 183725 TTCTTCTCTGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGT 183784
Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190
|| || ||| |||||||||||||| | ||||||||||| || |||||||||||||
Sbjct 183785 CTCACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCCTGT 183844
Query 117191 TTGCTGTTCA 117200
| || ||||
Sbjct 183845 CTCCTCTTCA 183854
Score = 118 bits (130), Expect = 1e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || |||||||||||||| | || || || || |
Sbjct 169519 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAGGTTGAGTCCTCT 169460
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || |||| ||||| || || || || | ||||||
Sbjct 169459 GACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAG 169400
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | || | ||| || || || || || |||| || || || ||||||||||
Sbjct 169399 CAGCGATTAATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAAC 169340
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||| |||||| |||| || ||||| || |||||
Sbjct 169339 ATCCAAAAGGAGTCCACCCTCCATCTCGTCTTGCG 169305
Score = 111 bits (122), Expect = 2e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || |||||||||||||| | || ||||| || |
Sbjct 169009 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAAGTCGAGTCCTCT 168950
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||||| || |||| ||||| ||||| ||||| | || |||
Sbjct 168949 GACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 168890
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|||||| | |||| || || ||||| || || || | || || || ||| ||||||
Sbjct 168889 CAACGATTGATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGATTACAAC 168830
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | || || || || ||
Sbjct 168829 ATCCAGAAGGAGTCAACTCTTCACCTTGT 168801
Score = 82.4 bits (90), Expect = 8e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| || || |||||| | || |||||||||||||| | |
Sbjct 168646 TCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCCGATCAGCAACGACTCATTTTTG 168587
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
| || || || || || || | || ||||| |||||||||||| || || ||| |||
Sbjct 168586 CCGGAAAGCAACTAGAGGATGGTCGTACCCTTTCCGACTACAACATTCAAAAAGAGTCCA 168527
Query 40886 CGCTGCATCTAGT 40898
| || ||||| ||
Sbjct 168526 CTCTTCATCTTGT 168514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515214183053040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |