Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6 156 4e-33 >seq6 Length=242052 Score = 156 bits (172), Expect = 4e-33 Identities = 186/250 (74%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 |||| || || || || || || || | |||||||||| ||||| || || |||||| Sbjct 183606 ACGCTATGGACACCATCCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCT 183665 Query 117012 CCGGCAGAGAGGCCGCCTT-CGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 | | || || | | || ||| ||||| || | || ||||| |||||||| || || Sbjct 183666 CTGACA-AGCGATCTTGTTTCGGTGAGCGACTCATCGCTTTCGCTGCCGTCGAAGGTATC 183724 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 ||||| || || ||||||| |||| || ||||||||||| || || |||||||| || Sbjct 183725 TTCTTCTCTGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGT 183784 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 || || ||| |||||||||||||| | ||||||||||| || ||||||||||||| Sbjct 183785 CTCACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCCTGT 183844 Query 117191 TTGCTGTTCA 117200 | || |||| Sbjct 183845 CTCCTCTTCA 183854 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || |||||||||||||| | || || || || | Sbjct 169519 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAGGTTGAGTCCTCT 169460 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| ||||| || || || || | |||||| Sbjct 169459 GACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAG 169400 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| || || || || || |||| || || || |||||||||| Sbjct 169399 CAGCGATTAATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAAC 169340 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| |||| || ||||| || ||||| Sbjct 169339 ATCCAAAAGGAGTCCACCCTCCATCTCGTCTTGCG 169305 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || |||||||||||||| | || ||||| || | Sbjct 169009 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAAGTCGAGTCCTCT 168950 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| ||||| ||||| ||||| | || ||| Sbjct 168949 GACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGATCAG 168890 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| || || ||||| || || || | || || || ||| |||||| Sbjct 168889 CAACGATTGATCTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGATTACAAC 168830 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 168829 ATCCAGAAGGAGTCAACTCTTCACCTTGT 168801 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| || || |||||| | || |||||||||||||| | | Sbjct 168646 TCAAGGCCAAGATCCAAGACAAGGAAGGTATCCCCCCCGATCAGCAACGACTCATTTTTG 168587 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || || || || || || | || ||||| |||||||||||| || || ||| ||| Sbjct 168586 CCGGAAAGCAACTAGAGGATGGTCGTACCCTTTCCGACTACAACATTCAAAAAGAGTCCA 168527 Query 40886 CGCTGCATCTAGT 40898 | || ||||| || Sbjct 168526 CTCTTCATCTTGT 168514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214183053040