Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014-
10-24] 779 sequences; 17,256,624 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq6 98.7 2e-15
>seq6
Length=242052
Score = 98.7 bits (108), Expect = 2e-15
Identities = 146/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 124560 CTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAA 124619
|| || || || || || ||| | ||| | ||| | | |||||||| ||| | ||
Sbjct 168701 CTTACGGGTAAGACAATTACTCTTGAGGTCGAATCTAGCGATACAATCGACAATGTCAAG 168642
Query 124620 CAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGA 124679
|| || ||||| || |||||||| || || ||||| ||| | || |||||||| |||
Sbjct 168641 GCCAAGATCCAAGACAAGGAAGGTATCCCCCCCGATCAGCAACGACTCATTTTTGCCGGA 168582
Query 124680 AAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTG 124739
|| ||| |||||||| |||| || | || || || ||||||||||| || ||| |
Sbjct 168581 AAGCAACTAGAGGATGGTCGTACCCTTTCCGACTACAACATTCAAAAAGAGTCCACTCTT 168522
Query 124740 CATTTGGTTTTACGTTTACGAGGTGGT 124766
||| | || | ||| | || ||||||
Sbjct 168521 CATCTTGTCCTCCGTCTCCGTGGTGGT 168495
Score = 86.0 bits (94), Expect = 9e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | ||||| || || |||||||| || ||| | ||| |||| | |
Sbjct 169519 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAGGTTGAGTCCTCT 169460
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | || ||| ||||| || || |||||||| || ||||| ||
Sbjct 169459 GACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAG 169400
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | | ||||| || ||||| ||| | || || | ||||| | || || ||
Sbjct 169399 CAGCGATTAATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAAC 169340
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| || || || | ||| | || || ||| | |||||||||||
Sbjct 169339 ATCCAAAAGGAGTCCACCCTCCATCTCGTCTTGCGTCTCCGAGGTGGTAT 169290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755448643747200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |