Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 1e-15 >seq6 Length=242052 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | |||||| || | ||| | ||| ||||||||| || ||||| || | Sbjct 169293 CCACCTCGGAGACGCAAGACGAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAA 169352 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || || ||||| || ||||| || | |||||||||||| | || Sbjct 169353 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGA 169412 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| ||| | || | |||| | | | ||||| || || || Sbjct 169413 ATACCTTCCTTGTCC-TGAATCTTCGCCTTGACATTGTCGATGGTGTCAGAGGACTCAAC 169471 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || || ||||| || || || ||||| Sbjct 169472 CTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGACGAAAATCTGCAT 169519 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | ||||| || | || || || || |||||||| || Sbjct 168818 CTCCTTCTGGATGTTGTAATCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAA 168877 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || | ||| ||||| || | || | | |||||||||| ||| | || | |||| Sbjct 168878 GATCAATCGTTGCTGATCAGGAGGGATACCCTCCTTGTCC-TGAATCTTCGCCTTGACAT 168936 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || || | |||||||||||||| || || ||||| | Sbjct 168937 TGTCGATCGTGTCAGAGGACTCGACTTCAAGAGTGATGGTTTTGCCGGTAAGAGTCTTGA 168996 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 168997 CGAAAATCTGCAT 169009 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 43003 TATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCT 43062 || |||| || | ||||||| | || || |||||||||||||| || || | ||||| Sbjct 169618 TACTGTAGTCGGAAAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGCT 169677 Query 43063 GCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGT 43122 ||||||| | || | | |||||||||| ||| || |||| | | | |||| Sbjct 169678 GCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGT 169737 Query 43123 CGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182 || || ||||| |||| ||||| || || || || || ||||| || || || |||| Sbjct 169738 CGGAAGACTCCACTTCGAGAGTGATAGTCTTACCGGTGAGGGTCTTGACGAAAATCTGCA 169797 Query 43183 T 43183 | Sbjct 169798 T 169798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812031926120