Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20gattii_20VGI_20[genbank_20GCA_5F000786445.1_202014- 10-24] 779 sequences; 17,256,624 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 >seq6 Length=242052 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || |||||||| ||||| | || ||||| | || Sbjct 169519 ATGCAGATTTTCGTCAAGACTCTTACCGGCAAAACCATCACTCTTGAGGTTGAGTCCTCT 169460 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || |||||||||||| | || || |||||| Sbjct 169459 GACACCATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAG 169400 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| |||| ||||| || || || | |||||| ||| | ||| || ||| Sbjct 169399 CAGCGATTAATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAAC 169340 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || ||||| || || || || ||||| || Sbjct 169339 ATCCAAAAGGAGTCCACCCTCCATCTCGT 169311 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 |||| ||| | || ||||| ||||| |||||||||||||| ||||| || || || Sbjct 183683 TTCGGTGAGCGACTCATCGCTTTCGCTGCCGTCGAAGGTATCTTCTTCTCTGGTTCTTTC 183742 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 || | || || ||| | ||||| || || || ||||| || || || || |||||| Sbjct 183743 GCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAG 183802 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 | || || || |||||||||||||| || || ||||| || || Sbjct 183803 CTCATCTCTCGTGACGAGGGTCTCCACACCGACTTTGCCTGTCT 183846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762059349680